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SMTL ID : 5jfm.2
(1 other biounit)
Crystal structure of Rhodopseudomonas palustris propionaldehyde dehydrogenase with bound propionyl-CoA
Coordinates
PDB Format
Compare
Method
X-RAY DIFFRACTION 2.52 Å
Oligo State
homo-tetramer
Ligands
4 x
1VU
:
propionyl Coenzyme A
(Non-covalent)
1VU.1:
25 residues within 4Å:
Chain A:
I.194
,
T.195
,
P.196
,
T.198
,
N.199
,
S.221
,
P.222
,
H.223
,
R.225
,
S.258
,
I.259
,
T.262
,
T.277
,
G.278
,
G.279
,
I.282
,
A.296
,
P.329
,
C.330
,
T.380
,
V.383
,
M.421
,
L.483
,
F.493
,
I.495
15
PLIP interactions
:
15 interactions with chain A
Hydrophobic interactions:
A:T.198
,
A:P.329
,
A:T.380
,
A:V.383
,
A:L.483
,
A:I.495
Hydrogen bonds:
A:T.195
,
A:T.198
,
A:S.221
,
A:T.262
Water bridges:
A:G.279
Salt bridges:
A:H.223
,
A:H.223
,
A:R.225
pi-Cation interactions:
A:H.223
1VU.2:
24 residues within 4Å:
Chain B:
M.146
,
I.194
,
T.195
,
P.196
,
T.197
,
T.198
,
N.199
,
S.221
,
P.222
,
H.223
,
R.225
,
S.258
,
I.259
,
T.262
,
T.277
,
G.278
,
G.279
,
I.282
,
P.329
,
C.330
,
T.380
,
M.421
,
L.483
,
F.493
13
PLIP interactions
:
13 interactions with chain B
Hydrophobic interactions:
B:P.329
,
B:T.380
,
B:L.483
,
B:F.493
Hydrogen bonds:
B:T.195
,
B:T.198
,
B:S.221
Water bridges:
B:G.279
,
B:G.279
Salt bridges:
B:H.223
,
B:H.223
,
B:R.225
pi-Cation interactions:
B:H.223
1VU.3:
23 residues within 4Å:
Chain C:
I.194
,
T.195
,
P.196
,
T.197
,
T.198
,
N.199
,
S.221
,
P.222
,
H.223
,
P.224
,
R.225
,
S.258
,
I.259
,
T.262
,
T.277
,
G.278
,
G.279
,
A.281
,
C.330
,
T.380
,
F.493
,
T.494
,
I.495
11
PLIP interactions
:
11 interactions with chain C
Hydrophobic interactions:
C:T.197
,
C:T.198
,
C:I.495
Hydrogen bonds:
C:P.222
,
C:T.262
,
C:I.495
Salt bridges:
C:H.223
,
C:R.225
,
C:R.225
pi-Cation interactions:
C:H.223
,
C:H.223
1VU.4:
22 residues within 4Å:
Chain D:
I.194
,
T.195
,
P.196
,
T.197
,
T.198
,
N.199
,
S.221
,
P.222
,
H.223
,
R.225
,
I.259
,
T.262
,
T.277
,
G.278
,
G.279
,
A.281
,
P.329
,
C.330
,
M.421
,
L.483
,
F.493
,
I.495
16
PLIP interactions
:
16 interactions with chain D
Hydrophobic interactions:
D:T.197
,
D:T.198
,
D:P.329
,
D:L.483
,
D:F.493
,
D:I.495
Hydrogen bonds:
D:T.195
,
D:T.198
,
D:T.198
,
D:S.221
,
D:T.262
,
D:C.330
Salt bridges:
D:H.223
,
D:H.223
,
D:R.225
pi-Cation interactions:
D:H.223
Links
RCSB
PDBe
PDBe-KB
PDBj
PDBsum
CATH
PLIP
Citation
Zarzycki, J. et al., In Vitro Characterization and Concerted Function of Three Core Enzymes of a Glycyl Radical Enzyme - Associated Bacterial Microcompartment. Sci Rep (2017)
Release Date
2017-03-01
Peptides
Aldehyde dehydrogenase:
A
B
C
D
SMTL:PDB
SMTL Chain Id:
PDB Chain Id:
A
E
B
F
C
G
D
H
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Aldehyde dehydrogenase
Toggle Identical (AC)
Related Entries With Identical Sequence
5jfl.1
|
5jfl.2
|
5jfm.1
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