SMTL ID : 5ji6.1

Potent, Reversible MetAP2 Inhibitors via FBDD

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.15 Å

Oligo State

monomer

Ligands

2 x MN: MANGANESE (II) ION(Non-covalent)

MN.1: 5 residues within 4Å: Chain A: D.142, D.153, E.350 Ligands: MN.2, 6KN.4 5 PLIP interactions: 3 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:D.142, A:D.153, A:E.350, H2O.1, H2O.1 MN.2: 7 residues within 4Å: Chain A: D.153, H.222, A.253, E.255, E.350 Ligands: MN.1, 6KN.4 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.153, A:H.222, A:E.255, A:E.350, H2O.1

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.3: 1 residues within 4Å: Chain A: H.282 1 PLIP interactions: 1 interactions with chain A Salt bridges: A:H.282

1 x 6KN: 4-(3-methylpyridin-4-yl)-6-(trifluoromethyl)-1H-indazole(Non-covalent)

6KN.4: 13 residues within 4Å: Chain A: F.110, H.122, D.153, H.222, I.229, H.230, E.255, H.273, M.275, A.305, Y.335 Ligands: MN.1, MN.2 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:I.229, A:I.229, A:H.230, A:Y.335 Hydrogen bonds: A:D.153 pi-Cation interactions: A:H.122

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Cheruvallath, Z. et al., Discovery of potent, reversible MetAP2 inhibitors via fragment based drug discovery and structure based drug design-Part 1. Bioorg.Med.Chem.Lett. (2016)

Release Date

2016-05-25

Peptides

Methionine aminopeptidase 2: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Methionine aminopeptidase 2

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