SMTL ID : 5jki.1

Crystal structure of the first transmembrane PAP2 type phosphatidylglycerolphosphate phosphatase from Bacillus subtilis

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.25 Å

Oligo State

monomer

Ligands

1 x WO4: TUNGSTATE(VI)ION(Non-covalent)

WO4.1: 8 residues within 4Å: Chain A: K.115, R.122, E.131, S.138, G.139, H.140, R.184, H.190 13 PLIP interactions: 13 interactions with chain A Hydrogen bonds: A:K.115, A:R.122, A:R.122, A:E.131, A:E.131, A:G.139, A:H.140, A:H.140, A:R.184, A:R.184, A:H.190, A:H.190 Metal complexes: A:H.190

1 x OLC: (2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate(Non-covalent)

OLC.2: 9 residues within 4Å: Chain A: S.74, L.78, L.98, L.101, L.102, F.104, G.105, R.108 Ligands: UNL.6 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.108, A:R.108

4 x UNL: UNKNOWN LIGAND

UNL.3: 7 residues within 4Å: Chain A: F.29, I.32, L.33, A.36, T.39, A.41, V.42 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:F.29, A:I.32, A:L.33, A:A.36, A:A.41, A:V.42 UNL.4: 4 residues within 4Å: Chain A: L.31, A.34, A.35, H.38 No protein-ligand interaction detected (PLIP) UNL.5: 6 residues within 4Å: Chain A: H.70, S.75, F.76, P.79, L.80, I.83 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:F.76, A:P.79, A:I.83 UNL.6: 7 residues within 4Å: Chain A: L.102, G.105, T.106, R.108, L.109, K.112 Ligands: OLC.2 1 PLIP interactions: 1 interactions with chain A Hydrophobic interactions: A:L.102

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ghachi, M.E. et al., Crystal structure and biochemical characterization of the transmembrane PAP2 type phosphatidylglycerol phosphate phosphatase from Bacillus subtilis. Cell. Mol. Life Sci. (2017)

Release Date

2017-02-22

Peptides

Putative lipid phosphate phosphatase YodM: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Membrane

We predict this structure to be a membrane protein.
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Putative lipid phosphate phosphatase YodM

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