SMTL ID : 6fmx.1

IMISX-EP of W-PgpB

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.79 Å

Oligo State

monomer

Ligands

5 x OLC: (2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate(Non-covalent)

OLC.1: 9 residues within 4Å: Chain A: H.70, S.75, F.76, P.79, L.80, I.83, I.84, G.87, M.88 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:F.76, A:F.76, A:P.79, A:I.83, A:I.84 Hydrogen bonds: A:H.70 OLC.2: 7 residues within 4Å: Chain A: S.25, L.28, F.29, I.32, L.33, A.36, T.39 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:L.28, A:F.29, A:I.32, A:L.33, A:A.36 Water bridges: A:A.41 OLC.3: 5 residues within 4Å: Chain A: L.31, I.32, A.34, A.35, H.38 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:L.31, A:I.32, A:A.35 Salt bridges: A:H.38 OLC.4: 8 residues within 4Å: Chain A: L.102, V.103, G.105, T.106, L.109, V.209, F.212 Ligands: OLC.5 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:L.102, A:L.109, A:F.212, A:F.212 OLC.5: 9 residues within 4Å: Chain A: S.74, L.78, L.98, L.101, L.102, F.104, G.105, R.108 Ligands: OLC.4 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:L.98, A:L.101, A:L.102, A:L.102 Hydrogen bonds: A:S.74, A:R.108, A:R.108

1 x WO4: TUNGSTATE(VI)ION(Non-covalent)

WO4.6: 8 residues within 4Å: Chain A: K.115, R.122, P.137, S.138, G.139, H.140, R.184, H.190 8 PLIP interactions: 8 interactions with chain A Hydrogen bonds: A:K.115, A:R.122, A:R.122, A:G.139, A:H.140, A:R.184, A:H.190 Metal complexes: A:H.190

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Huang, C.Y. et al., In situ serial crystallography for rapid de novo membrane protein structure determination. Commun Biol (2018)

Release Date

2018-09-05

Peptides

Phosphatidylglycerophosphatase B: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Membrane

We predict this structure to be a membrane protein.
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Phosphatidylglycerophosphatase B

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