SMTL ID : 5jmm.1

Crystal structure of hERa-LBD (Y537S) in complex with biochanin A

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.10 Å

Oligo State

hetero-2-2-mer

Ligands

2 x QSO: 5,7-dihydroxy-3-(4-methoxyphenyl)-4H-chromen-4-one(Non-covalent)

QSO.1: 13 residues within 4Å: Chain A: M.46, L.49, A.53, E.56, L.90, M.91, L.94, R.97, I.127, G.224, H.227, L.228, M.231 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:L.90, A:L.94, A:L.228 Hydrogen bonds: A:L.90, A:R.97 Water bridges: A:R.97 pi-Stacking: A:F.107 QSO.2: 13 residues within 4Å: Chain B: M.46, L.49, A.53, E.56, L.90, M.91, L.94, R.97, F.107, M.124, G.224, H.227, L.228 7 PLIP interactions: 7 interactions with chain B Hydrophobic interactions: B:L.90, B:L.94, B:L.228 Hydrogen bonds: B:L.90, B:R.97 Water bridges: B:R.97 pi-Stacking: B:F.107

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.3: 5 residues within 4Å: Chain B: L.23, E.26, W.96, G.145, F.148 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:E.26 GOL.5: 6 residues within 4Å: Chain B: Q.144, E.147, L.192, A.196, L.198, R.206 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:N.142, B:E.147 Water bridges: B:M.141, B:R.206

1 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.4: 2 residues within 4Å: Chain B: T.14, A.15 1 PLIP interactions: 1 interactions with chain B Water bridges: B:A.15

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Delfosse, V. et al., Crystal structure of hERa-LBD (Y537S) in complex with biochanin A. To Be Published

Release Date

2017-05-10

Peptides

Estrogen receptor: AB
Nuclear receptor coactivator 1: CD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
F

D
G

Estrogen receptor

Nuclear receptor coactivator 1

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