SMTL ID : 5jmo.2 (1 other biounit)

X-ray structure of furin in complex with the inhibitory antibody Nb14

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

hetero-1-1-mer

Ligands

1 x DKA- ARG- VAL- LYS- AR7- 0QE: CMK-inhibitor(Non-covalent)

DKA-ARG-VAL-LYS-AR7-0QE.1: 26 residues within 4Å: Chain A: D.47, D.84, N.85, H.87, L.120, V.124, E.129, S.146, W.147, G.148, P.149, E.150, D.151, D.157, G.158, A.185, S.186, G.187, N.188, D.199, Y.201, T.202, T.258, T.260, S.261 Ligands: CA.6 22 PLIP interactions: 22 interactions with chain A Hydrophobic interactions: A:H.87, A:L.120, A:V.124, A:E.150 Hydrogen bonds: A:D.47, A:S.146, A:G.148, A:G.148, A:P.149, A:A.185, A:N.188, A:Y.201, A:Y.201, A:S.261 Water bridges: A:E.150, A:E.150, A:D.151, A:T.258 Salt bridges: A:E.129, A:D.151, A:D.157, A:D.199

2 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.2: 4 residues within 4Å: Chain A: A.277, N.278, N.280, Q.332 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:N.278 Hydrogen bonds: A:N.280 Water bridges: A:N.278, A:N.278, A:N.278 NAG.3: 2 residues within 4Å: Chain A: Q.332, N.333 1 PLIP interactions: 1 interactions with chain A Water bridges: A:N.333

3 x CA: CALCIUM ION(Non-covalent)

CA.4: 3 residues within 4Å: Chain A: D.67, D.72, D.74 5 PLIP interactions: 2 interactions with chain A, 3 Ligand-Water interactions Metal complexes: A:D.67, A:D.74, H2O.3, H2O.9, H2O.13 CA.5: 6 residues within 4Å: Chain A: D.8, D.55, V.98, N.101, V.103, G.105 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:D.8, A:D.55, A:V.98, A:V.103, A:G.105 CA.6: 4 residues within 4Å: Chain A: D.151, D.194, E.224 Ligands: DKA-ARG-VAL-LYS-AR7-0QE.1 5 PLIP interactions: 2 interactions with chain A, 3 Ligand-Water interactions Metal complexes: A:D.194, A:E.224, H2O.2, H2O.4, H2O.9

1 x NA: SODIUM ION(Non-functional Binders)

NA.7: 4 residues within 4Å: Chain A: T.202, S.204, T.207, S.209 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:T.207, A:T.207, A:T.207, A:S.209

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Dahms, S.O. et al., The structure of a furin-antibody complex explains non-competitive inhibition by steric exclusion of substrate conformers. Sci Rep (2016)

Release Date

2016-12-07

Peptides

Furin: A
camelid VHH fragment: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

B
D

Furin

camelid VHH fragment

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