SMTL ID : 5jn2.1

Crystal structure of TgCDPK1 bound to NVPACU106

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.20 Å

Oligo State

monomer

Ligands

1 x 6LO: N-[(3-{4-amino-5-[3-(benzyloxy)phenyl]-7H-pyrrolo[2,3-d]pyrimidin-7-yl}cyclobutyl)methyl]acetamide(Non-covalent)

6LO.1: 16 residues within 4Å: Chain A: L.75, V.83, A.96, K.98, L.121, M.130, L.132, L.144, E.147, V.148, Y.149, L.199, I.212, D.213, F.214, L.216 9 PLIP interactions: 9 interactions with chain A Hydrophobic interactions: A:A.96, A:K.98, A:L.199, A:I.212, A:L.216 Hydrogen bonds: A:E.147, A:Y.149, A:D.213, A:D.213

1 x CA: CALCIUM ION(Non-covalent)

CA.2: 5 residues within 4Å: Chain A: D.469, D.471, S.473, K.475 Ligands: EDO.3 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:D.469, A:D.471, A:S.473, A:K.475

1 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.3: 7 residues within 4Å: Chain A: D.471, S.473, K.475, I.476, S.477, E.509 Ligands: CA.2 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:D.471, A:E.509

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

El Bakkouri, M. et al., Crystal structure of TgCDPK1 bound to NVPACU106. To Be Published

Release Date

2016-05-25

Peptides

Calmodulin-domain protein kinase 1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Calmodulin-domain protein kinase 1

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