SMTL ID : 5jov.1

Bacteroides ovatus Xyloglucan PUL GH31 with bound 5FIdoF

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.50 Å

Oligo State

monomer

Ligands

1 x NI: NICKEL (II) ION(Non-covalent)

NI.1: 2 residues within 4Å: Chain A: H.492, H.542 3 PLIP interactions: 2 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:H.492, A:H.542, H2O.26

5 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.2: 6 residues within 4Å: Chain A: N.257, L.258, K.259, T.564, D.565, Y.568 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:N.257, A:L.258, A:K.259, A:D.565 EDO.3: 4 residues within 4Å: Chain A: R.430, M.474, H.475, Y.852 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:Y.852, A:Y.852 EDO.4: 7 residues within 4Å: Chain A: Y.302, L.303, N.304, N.305, P.335, L.336, K.337 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:N.304, A:N.305, A:N.305, A:P.335, A:K.337 EDO.5: 7 residues within 4Å: Chain A: E.155, D.156, E.157, A.158, N.171, K.173, N.775 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:N.171, A:N.775 Water bridges: A:A.772 EDO.6: 4 residues within 4Å: Chain A: L.122, I.123, P.154, K.195 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:K.195 Water bridges: A:K.195

1 x EPE: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID(Non-functional Binders)

EPE.7: 8 residues within 4Å: Chain A: N.183, W.317, W.483, W.514, N.559, D.562, R.614 Ligands: B9D.8 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:N.183, A:N.559 Water bridges: A:N.559, A:D.562 Salt bridges: A:D.562, A:R.614

1 x B9D: 5-fluoro-alpha-L-idopyranose(Post Translational Modification)

B9D.8: 12 residues within 4Å: Chain A: E.414, D.442, W.443, W.483, W.552, D.554, R.614, W.628, D.631, F.664, H.710 Ligands: EPE.7 8 PLIP interactions: 8 interactions with chain A Hydrogen bonds: A:D.554, A:R.614, A:D.631, A:H.710 Water bridges: A:E.414, A:D.631, A:D.631, A:Q.712

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Hemsworth, G.R. et al., Structural dissection of a complex Bacteroides ovatus gene locus conferring xyloglucan metabolism in the human gut. Open Biology (2016)

Release Date

2016-08-10

Peptides

Alpha-xylosidase BoGH31A: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Alpha-xylosidase BoGH31A

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