SMTL ID : 5jsg.2 (1 other biounit)

Crystal structure of Spindlin1 bound to compound EML405

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.50 Å

Oligo State

monomer

Ligands

1 x 6P9: [2-(phenylamino)-1,4-phenylene]bis({4-[2-(pyrrolidin-1-yl)ethyl]piperidin-1-yl}methanone)(Non-covalent)

6P9.1: 13 residues within 4Å: Chain A: H.20, W.22, W.32, Y.51, F.54, Y.58, L.60, F.101, W.111, D.133, Y.137, Y.139, F.211 13 PLIP interactions: 13 interactions with chain A Hydrophobic interactions: A:W.22, A:W.32, A:Y.58, A:L.60, A:F.211 Water bridges: A:Y.58 pi-Stacking: A:F.54, A:F.101, A:W.111, A:W.111, A:Y.130, A:Y.137 pi-Cation interactions: A:Y.51

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.2: 3 residues within 4Å: Chain A: W.111, R.112, K.132 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Bae, N. et al., Developing Spindlin1 small-molecule inhibitors by using protein microarrays. Nat. Chem. Biol. (2017)

Release Date

2017-05-10

Peptides

Spindlin-1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Spindlin-1

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