SMTL ID : 5jsj.1 (1 other biounit)

Crystal structure of Spindlin1 bound to compound EML631

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.35 Å

Oligo State

monomer

Ligands

1 x 6PD: [4-(2-pyrrolidin-1-ylethyl)piperidin-1-yl]-[4-[4-(2-pyrrolidin-1-ylethyl)piperidin-1-yl]carbonyl-3-[[4-(pyrrolidin-1-ylmethoxy)phenyl]amino]phenyl]methanone(Non-covalent)

6PD.1: 17 residues within 4Å: Chain A: H.20, W.22, W.32, Y.51, F.54, C.56, Y.58, L.60, F.101, W.111, Y.130, D.133, V.135, Y.137, Y.139, F.211, H.212 17 PLIP interactions: 17 interactions with chain A Hydrophobic interactions: A:W.22, A:W.32, A:W.32, A:W.32, A:Y.51, A:Y.51, A:F.54, A:F.54, A:Y.58, A:L.60, A:F.101, A:F.101, A:Y.137, A:F.211 Water bridges: A:D.55 Salt bridges: A:D.133 pi-Cation interactions: A:Y.51

1 x MG: MAGNESIUM ION(Non-functional Binders)

MG.2: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP)

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.3: 3 residues within 4Å: Chain A: W.111, R.112, K.132 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Bae, N. et al., Developing Spindlin1 small-molecule inhibitors by using protein microarrays. Nat. Chem. Biol. (2017)

Release Date

2017-05-24

Peptides

Spindlin-1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Spindlin-1

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