SMTL ID : 5jt8.1 (1 other biounit)

Structural basis for the limited antibody cross reactivity between the mite allergens Blo t 1 and Der p 1

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.10 Å

Oligo State

monomer

Ligands

1 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.1: 3 residues within 4Å: Chain A: N.93, Y.96, M.99 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.93

2 x CL: CHLORIDE ION(Non-functional Binders)

CL.2: 1 residues within 4Å: Chain A: R.196 Ligand excluded by PLIP CL.3: 2 residues within 4Å: Chain A: R.210, T.211 Ligand excluded by PLIP

4 x NO3: NITRATE ION(Non-functional Binders)

NO3.4: 6 residues within 4Å: Chain A: M.97, Y.186, S.187, T.188, Q.230, Y.253 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:S.187, A:T.188, A:Y.253 Water bridges: A:Y.327 NO3.5: 5 residues within 4Å: Chain A: N.258, Y.260, G.271, V.272, A.273 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:N.258, A:A.273 Water bridges: A:Y.260 NO3.6: 5 residues within 4Å: Chain A: T.126, R.127, R.129, I.158, E.159 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:R.127, A:R.129, A:R.129 NO3.7: 4 residues within 4Å: Chain A: Y.274, N.275, G.318, H.319 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:N.275, A:G.318, A:H.319

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Meno, K.H. et al., The structure of the mite allergen Blo t 1 explains the limited antibody cross-reactivity to Der p 1. Allergy (2017)

Release Date

2017-05-24

Peptides

Blo t 1 allergen: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Blo t 1 allergen

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