SMTL ID : 5jt8.2 (1 other biounit)

Structural basis for the limited antibody cross reactivity between the mite allergens Blo t 1 and Der p 1

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.10 Å

Oligo State

monomer

Ligands

1 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.1: 3 residues within 4Å: Chain A: N.93, Y.96, M.99 No protein-ligand interaction detected (PLIP)

2 x CL: CHLORIDE ION(Non-functional Binders)

CL.2: 1 residues within 4Å: Chain A: T.211 Ligand excluded by PLIP CL.3: 1 residues within 4Å: Chain A: R.196 Ligand excluded by PLIP

2 x NO3: NITRATE ION(Non-functional Binders)

NO3.4: 5 residues within 4Å: Chain A: M.97, Y.186, S.187, T.188, Y.253 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:S.187, A:T.188, A:T.188 Water bridges: A:T.188, A:T.188 NO3.5: 5 residues within 4Å: Chain A: T.126, R.127, R.129, I.158, E.159 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:R.127, A:R.127, A:R.127, A:R.129, A:R.129

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Meno, K.H. et al., The structure of the mite allergen Blo t 1 explains the limited antibody cross-reactivity to Der p 1. Allergy (2017)

Release Date

2017-05-24

Peptides

Blo t 1 allergen: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Blo t 1 allergen

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