SMTL ID : 5jx5.4 (3 other biounits)

GH6 Orpinomyces sp. Y102 enzyme

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

monomer

Ligands

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 4 residues within 4Å: Chain A: A.89, D.90, S.93, T.94 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:D.90, A:S.93 GOL.4: 5 residues within 4Å: Chain A: Q.17, G.18, D.21, K.39, Y.40 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:K.39, A:K.39, A:Y.40

2 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.2: 8 residues within 4Å: Chain A: N.13, K.15, F.16, E.19, T.43, A.44, T.277, E.280 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:N.13, A:E.19, A:T.43, A:T.43, A:T.277 EDO.3: 1 residues within 4Å: Chain A: N.136 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.136

1 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)

PEG.5: 3 residues within 4Å: Chain A: A.256, R.257, P.320 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.257, A:R.257

2 x NH4: AMMONIUM ION(Non-functional Binders)

NH4.6: 5 residues within 4Å: Chain A: N.248, S.285, C.291, S.296, L.297 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:N.248, A:L.297 NH4.7: 2 residues within 4Å: Chain A: L.92, Q.96 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:Q.96, A:Q.96

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Huang, H.C. et al., Crystal structures of GH6 Orpinomyces sp. Y102 CelC7 enzyme with exo- and endo- activity in a complex with cellobiose. Acta Crystallogr.,Sect.D (2019)

Release Date

2017-05-17

Peptides

Glucanase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
D

Glucanase

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