SMTL ID : 6idw.2 (3 other biounits)

GH6 Orpinomyces sp. Y102 enzyme

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.78 Å

Oligo State

monomer

Ligands

1 x BGC- BGC: beta-D-glucopyranose-(1-4)-beta-D-glucopyranose(Non-covalent)

BGC-BGC.1: 9 residues within 4Å: Chain A: D.121, H.166, G.168, W.169, V.200, S.201, N.202, A.244, W.246 8 PLIP interactions: 8 interactions with chain A Hydrogen bonds: A:V.200, A:N.202 Water bridges: A:D.121, A:S.201, A:S.201, A:S.201, A:S.201, A:S.201

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 4 residues within 4Å: Chain A: W.46, K.276, T.277, E.280 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:S.201, A:K.276, A:T.277, A:T.277, A:E.280

2 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.3: 3 residues within 4Å: Chain A: S.2, E.7, R.194 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:E.7, A:R.194 Water bridges: A:D.3, A:N.4, A:D.270 EDO.5: 9 residues within 4Å: Chain A: L.10, Y.11, P.42, T.43, A.44, V.69, P.258, V.273, W.274 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:W.274 Water bridges: A:T.43, A:A.45

1 x MPD: (4S)-2-METHYL-2,4-PENTANEDIOL(Non-functional Binders)

MPD.4: 3 residues within 4Å: Chain A: G.97, N.100, N.104 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:N.100 Hydrogen bonds: A:N.100

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Huang, H.C. et al., Crystal structures of the GH6 Orpinomyces sp. Y102 CelC7 enzyme with exo and endo activity and its complex with cellobiose. Acta Crystallogr D Struct Biol (2019)

Release Date

2018-10-17

Peptides

Glucanase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Glucanase

Related Entries With Identical Sequence