- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.40 Å
- Oligo State
- monomer
- Ligands
- 1 x A2G- GAL: beta-D-galactopyranose-(1-3)-2-acetamido-2-deoxy-alpha-D-galactopyranose(Non-covalent)
- 2 x PO4: PHOSPHATE ION(Non-functional Binders)
- 1 x ZN: ZINC ION(Non-covalent)
- 15 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
EDO.5: 8 residues within 4Å:- Chain A: L.684, D.687, W.688, T.747, W.764, T.862, N.863, Y.865
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:N.863, A:Y.865
- Water bridges: A:N.863
EDO.6: 7 residues within 4Å:- Chain A: Q.444, R.445, S.448, N.625, D.627, Y.629, D.642
4 PLIP interactions:4 interactions with chain A- Hydrogen bonds: A:Q.444, A:R.445, A:S.448, A:N.625
EDO.7: 6 residues within 4Å:- Chain A: F.578, D.581, A.582, S.655, F.682, K.686
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:D.581, A:A.582, A:S.655
EDO.8: 9 residues within 4Å:- Chain A: Y.371, L.441, N.442, L.463, K.464, S.465, S.480, G.483, G.484
4 PLIP interactions:4 interactions with chain A- Hydrogen bonds: A:N.442, A:L.463, A:S.480, A:S.480
EDO.9: 5 residues within 4Å:- Chain A: K.786, G.792, T.793, Y.794, A.795
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:K.786, A:T.793
EDO.10: 9 residues within 4Å:- Chain A: G.440, L.441, N.442, K.464, S.465, P.466, D.467, Q.487, V.489
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:K.464, A:S.465
EDO.11: 7 residues within 4Å:- Chain A: D.700, T.701, R.702, V.703, N.860, R.861, T.862
4 PLIP interactions:4 interactions with chain A- Hydrogen bonds: A:V.703, A:T.862
- Water bridges: A:Y.705, A:R.706
EDO.12: 3 residues within 4Å:- Chain A: T.291, N.453, T.454
4 PLIP interactions:4 interactions with chain A- Hydrogen bonds: A:T.291, A:K.352, A:K.352, A:N.453
EDO.13: 1 residues within 4Å:- Chain A: Q.631
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:Q.631
EDO.14: 5 residues within 4Å:- Chain A: S.558, K.561, D.562, W.645, N.648
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:S.558
- Water bridges: A:K.561, A:N.648
EDO.15: 7 residues within 4Å:- Chain A: S.436, L.437, A.438, K.469, V.489, Y.490, S.491
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:L.437
- Water bridges: A:Y.490, A:Y.490
EDO.16: 2 residues within 4Å:- Chain A: Q.268, D.272
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:Q.268
- Water bridges: A:D.272
EDO.17: 7 residues within 4Å:- Chain A: E.399, S.426, R.428, S.475, K.502, V.503, T.504
5 PLIP interactions:5 interactions with chain A- Hydrogen bonds: A:S.426, A:S.475, A:S.475, A:K.502, A:T.504
EDO.18: 3 residues within 4Å:- Chain A: D.755, V.868, L.870
3 PLIP interactions:3 interactions with chain A- Water bridges: A:D.755, A:D.755, A:L.870
EDO.19: 4 residues within 4Å:- Chain A: W.214, Y.234, Y.238, W.239
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:W.214
- 1 x SER: SERINE(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Noach, I. et al., Recognition of protein-linked glycans as a determinant of peptidase activity. Proc. Natl. Acad. Sci. U.S.A. (2017)
- Release Date
- 2017-01-11
- Peptides
- Metallopeptidase: A
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
A
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.40 Å
- Oligo State
- monomer
- Ligands
- 1 x A2G- GAL: beta-D-galactopyranose-(1-3)-2-acetamido-2-deoxy-alpha-D-galactopyranose(Non-covalent)
- 2 x PO4: PHOSPHATE ION(Non-functional Binders)
- 1 x ZN: ZINC ION(Non-covalent)
- 15 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
- 1 x SER: SERINE(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Noach, I. et al., Recognition of protein-linked glycans as a determinant of peptidase activity. Proc. Natl. Acad. Sci. U.S.A. (2017)
- Release Date
- 2017-01-11
- Peptides
- Metallopeptidase: A
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
A