SMTL ID : 5kge.1

Crystal structure of PIM1 with inhibitor: 5-(3,4-dichlorophenyl)-1~{H}-pyrazol-3-amine

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.23 Å

Oligo State

monomer

Ligands

15 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.1: 8 residues within 4Å: Chain A: F.101, I.104, T.105, D.141, D.205, G.209, D.210 Ligands: EDO.7 Ligand excluded by PLIP EDO.2: 5 residues within 4Å: Chain A: R.107, A.109, L.110, Q.111, L.114 Ligand excluded by PLIP EDO.3: 6 residues within 4Å: Chain A: R.192, S.193, V.196, R.249, P.250, T.251 Ligand excluded by PLIP EDO.4: 2 residues within 4Å: Chain A: Q.235, R.239 Ligand excluded by PLIP EDO.5: 6 residues within 4Å: Chain A: L.5, E.6, V.11, I.37, H.39, R.83 Ligand excluded by PLIP EDO.6: 2 residues within 4Å: Chain A: L.164, K.165 Ligand excluded by PLIP EDO.7: 6 residues within 4Å: Chain A: D.141, E.142, Y.178, D.205, I.211 Ligands: EDO.1 Ligand excluded by PLIP EDO.8: 3 residues within 4Å: Chain A: R.185, Y.186, H.187 Ligand excluded by PLIP EDO.9: 5 residues within 4Å: Chain A: E.233, H.236, H.258, P.259 Ligands: EDO.11 Ligand excluded by PLIP EDO.10: 3 residues within 4Å: Chain A: P.96, L.148, N.149 Ligand excluded by PLIP EDO.11: 6 residues within 4Å: Chain A: W.240, E.254, N.257, H.258, P.259 Ligands: EDO.9 Ligand excluded by PLIP EDO.12: 2 residues within 4Å: Chain A: H.236, W.240 Ligand excluded by PLIP EDO.13: 3 residues within 4Å: Chain A: E.113, L.265, I.273 Ligand excluded by PLIP EDO.14: 5 residues within 4Å: Chain A: L.164, K.165, H.190, G.191, R.192 Ligand excluded by PLIP EDO.15: 3 residues within 4Å: Chain A: E.112, E.113, R.116 Ligand excluded by PLIP

1 x 6SN: 5-(3,4-dichlorophenyl)-1~{H}-pyrazol-3-amine(Non-covalent)

6SN.16: 12 residues within 4Å: Chain A: L.15, A.36, K.38, L.64, I.75, L.91, E.92, R.93, P.94, L.145, I.156, D.157 9 PLIP interactions: 9 interactions with chain A Hydrophobic interactions: A:I.75, A:L.91, A:L.145, A:I.156, A:I.156, A:I.156 Hydrogen bonds: A:D.157 Water bridges: A:K.38, A:K.38

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.17: 3 residues within 4Å: Chain A: R.127, N.131, F.252 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:E.253 Water bridges: A:F.252, A:F.252 Salt bridges: A:R.127 SO4.18: 3 residues within 4Å: Chain A: D.79, W.80, F.81 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:W.80

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ferguson, A.D., Structure of PIM1 in complex with inhibitor. To Be Published

Release Date

2017-08-09

Peptides

Serine/threonine-protein kinase pim-1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Serine/threonine-protein kinase pim-1

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