SMTL ID : 5kgg.1

Crystal structure of PIM1 with inhibitor: 2-(5-chloranyl-1~{H}-indol-3-yl)ethanamine

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.95 Å

Oligo State

monomer

Ligands

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.1: 5 residues within 4Å: Chain A: K.38, L.91, I.156, D.157 Ligands: 6SO.23 Ligand excluded by PLIP

21 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.2: 8 residues within 4Å: Chain A: F.101, I.104, T.105, D.141, D.205, G.209, D.210 Ligands: EDO.9 Ligand excluded by PLIP EDO.3: 5 residues within 4Å: Chain A: L.15, V.97, D.99, L.145 Ligands: 6SO.23 Ligand excluded by PLIP EDO.4: 5 residues within 4Å: Chain A: R.107, A.109, L.110, Q.111, L.114 Ligand excluded by PLIP EDO.5: 5 residues within 4Å: Chain A: R.192, S.193, T.251, F.252 Ligands: EDO.15 Ligand excluded by PLIP EDO.6: 1 residues within 4Å: Chain A: Q.235 Ligand excluded by PLIP EDO.7: 5 residues within 4Å: Chain A: L.5, E.6, V.11, H.39, R.83 Ligand excluded by PLIP EDO.8: 2 residues within 4Å: Chain A: L.164, K.165 Ligand excluded by PLIP EDO.9: 5 residues within 4Å: Chain A: F.101, D.141, Y.178, I.211 Ligands: EDO.2 Ligand excluded by PLIP EDO.10: 3 residues within 4Å: Chain A: R.245, P.246, S.247 Ligand excluded by PLIP EDO.11: 3 residues within 4Å: Chain A: K.140, T.175, R.176 Ligand excluded by PLIP EDO.12: 1 residues within 4Å: Chain A: R.150 Ligand excluded by PLIP EDO.13: 5 residues within 4Å: Chain A: E.233, H.236, H.258, P.259 Ligands: EDO.17 Ligand excluded by PLIP EDO.14: 6 residues within 4Å: Chain A: W.120, Q.256, M.261, Q.262, D.263, V.264 Ligand excluded by PLIP EDO.15: 6 residues within 4Å: Chain A: H.190, R.192, S.193, P.246 Ligands: EDO.5, EDO.20 Ligand excluded by PLIP EDO.16: 3 residues within 4Å: Chain A: P.96, L.148, N.149 Ligand excluded by PLIP EDO.17: 7 residues within 4Å: Chain A: W.240, E.254, N.257, H.258, P.259 Ligands: EDO.13, EDO.18 Ligand excluded by PLIP EDO.18: 3 residues within 4Å: Chain A: H.236, W.240 Ligands: EDO.17 Ligand excluded by PLIP EDO.19: 4 residues within 4Å: Chain A: E.112, R.229, V.230, S.231 Ligand excluded by PLIP EDO.20: 6 residues within 4Å: Chain A: L.164, K.165, D.166, G.191, R.192 Ligands: EDO.15 Ligand excluded by PLIP EDO.21: 3 residues within 4Å: Chain A: E.112, E.113, R.116 Ligand excluded by PLIP EDO.22: 2 residues within 4Å: Chain A: N.131, C.132 Ligand excluded by PLIP

1 x 6SO: 2-(5-chloranyl-1~{H}-indol-3-yl)ethanamine(Non-covalent)

6SO.23: 10 residues within 4Å: Chain A: L.15, V.23, A.36, R.93, D.99, L.145, I.156, D.157 Ligands: CL.1, EDO.3 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:V.23, A:V.23, A:A.36, A:L.145, A:I.156 Hydrogen bonds: A:D.99, A:D.99, A:D.157

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.24: 3 residues within 4Å: Chain A: R.127, N.131, F.252 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:E.253 Water bridges: A:R.127, A:R.127, A:F.252, A:F.252 Salt bridges: A:R.127 SO4.25: 3 residues within 4Å: Chain A: D.79, W.80, F.81 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:W.80

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ferguson, A.D., Structure of PIM1 in complex with inhibitor. To Be Published

Release Date

2017-08-09

Peptides

Serine/threonine-protein kinase pim-1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Serine/threonine-protein kinase pim-1

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