SMTL ID : 5kj7.2 (2 other biounits)

Structure of the Ca2+-bound synaptotagmin-1 SNARE complex (long unit cell form) - from XFEL diffraction

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.50 Å

Oligo State

monomer

Ligands

4 x CA: CALCIUM ION(Non-covalent)

CA.1: 5 residues within 4Å: Chain A: D.32, D.38, D.90, F.91, D.92 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:D.32, A:D.38, A:D.90, A:F.91 CA.2: 3 residues within 4Å: Chain A: D.32, D.90, D.92 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:D.32, A:D.90, A:D.92, A:D.92 CA.3: 3 residues within 4Å: Chain A: D.163, D.169, Y.224 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:D.169, A:Y.224 CA.4: 2 residues within 4Å: Chain A: F.112, G.113 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lyubimov, A.Y. et al., Advances in X-ray free electron laser (XFEL) diffraction data processing applied to the crystal structure of the synaptotagmin-1 / SNARE complex. Elife (2016)

Release Date

2016-10-19

Peptides

Synaptotagmin-1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
F

Synaptotagmin-1

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