SMTL ID : 5kj8.2 (2 other biounits)

Structure of the Ca2+-bound synaptotagmin-1 SNARE complex (long unit cell form) - from synchrotron diffraction

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 4.10 Å

Oligo State

monomer

Ligands

4 x CA: CALCIUM ION(Non-covalent)

CA.1: 6 residues within 4Å: Chain A: D.32, D.38, D.90, F.91, D.92 Ligands: CA.4 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:D.38, A:D.90, A:F.91 CA.2: 4 residues within 4Å: Chain A: D.32, D.90, D.92, D.98 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:D.32, A:D.32, A:D.90, A:D.92 CA.3: 5 residues within 4Å: Chain A: D.163, D.169, D.223, Y.224, D.225 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:D.163, A:D.169, A:Y.224 CA.4: 6 residues within 4Å: Chain A: D.32, T.36, S.37, D.38, D.90 Ligands: CA.1 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:T.36

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lyubimov, A.Y. et al., Advances in X-ray free electron laser (XFEL) diffraction data processing applied to the crystal structure of the synaptotagmin-1 / SNARE complex. Elife (2016)

Release Date

2016-10-19

Peptides

Synaptotagmin-1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
F

Synaptotagmin-1

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