SMTL ID : 5kly.1

Human Histidine Triad Nucleotide Binding Protein 1 (hHint1) H112N mutant adenosine nucleoside phosphoramidate substrate complex

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.30 Å

Oligo State

homo-dimer

Ligands

1 x 6UR: [(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-~{N}-[2-(1~{H}-indol-3-yl)ethyl]p hosphonamidic acid(Non-covalent)

6UR.1: 22 residues within 4Å: Chain A: I.21, F.22, I.25, F.44, H.45, D.46, I.47, S.48, L.56, N.102, G.108, Q.109, S.110, V.111, N.115, H.117 Chain B: R.98, Q.123, M.124, H.125, W.126 Ligands: PEG.2 15 PLIP interactions: 12 interactions with chain A, 3 interactions with chain B Hydrogen bonds: A:I.47, A:S.48, A:S.48, A:N.102, A:S.110, A:S.110, A:V.111, A:N.115 Water bridges: A:P.31, A:D.46, A:S.48, B:W.126 pi-Stacking: A:F.22 Hydrophobic interactions: B:W.126, B:W.126

1 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)

PEG.2: 4 residues within 4Å: Chain A: S.105, Q.109 Chain B: Q.123 Ligands: 6UR.1 No protein-ligand interaction detected (PLIP)

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.3: 5 residues within 4Å: Chain B: N.102, Q.109, S.110, N.115, H.117 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Maize, K.M. et al., A Crystal Structure Based Guide to the Design of Human Histidine Triad Nucleotide Binding Protein 1 (hHint1) Activated ProTides. Mol. Pharm. (2017)

Release Date

2017-06-28

Peptides

Histidine triad nucleotide-binding protein 1: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Histidine triad nucleotide-binding protein 1

Related Entries With Identical Sequence