SMTL ID : 5kmi.1

TrkA JM-kinase with 1-(9{H}-fluoren-9-yl)-3-(2-methyl-4-phenyl-pyrimidin-5-yl)urea

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.87 Å

Oligo State

monomer

Ligands

1 x 6UE: 1-(9~{H}-fluoren-9-yl)-3-(2-methyl-4-phenyl-pyrimidin-5-yl)urea(Non-covalent)

6UE.1: 20 residues within 4Å: Chain A: L.13, G.15, H.16, I.17, F.48, K.71, E.87, L.91, L.94, I.99, V.100, M.114, F.116, L.168, H.175, I.193, G.194, D.195, F.196, G.197 18 PLIP interactions: 18 interactions with chain A Hydrophobic interactions: A:L.13, A:I.17, A:F.48, A:K.71, A:E.87, A:L.91, A:L.91, A:L.94, A:I.99, A:F.116, A:F.116, A:L.168 Hydrogen bonds: A:I.17, A:D.195, A:D.195 pi-Stacking: A:H.16, A:H.175 pi-Cation interactions: A:K.71

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Su, H.P. et al., Structural characterization of nonactive site, TrkA-selective kinase inhibitors. Proc. Natl. Acad. Sci. U.S.A. (2017)

Release Date

2016-12-28

Peptides

High affinity nerve growth factor receptor: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

High affinity nerve growth factor receptor

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