SMTL ID : 5knm.1

Human leukocyte antigen F (HLA-F) presents peptides and regulates immunity through interactions with NK-cell receptors

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.30 Å

Oligo State

hetero-1-1-1-mer

Ligands

1 x ILE- LEU- ARG- TRP- GLU- GLN: Peptide ILE-LEU-ARG-TRP-GLU-GLN(Non-covalent)

ILE-LEU-ARG-TRP-GLU-GLN.1: 16 residues within 4Å: Chain A: Y.7, S.9, W.62, Y.66, A.69, N.70, D.74, G.97, M.98, N.99, H.114, H.116, Y.147, Y.152, E.155, Y.159 13 PLIP interactions: 13 interactions with chain A Hydrophobic interactions: A:Y.7, A:Y.7, A:W.62, A:Y.66, A:A.69, A:N.99 Hydrogen bonds: A:N.70, A:Y.147, A:Y.152, A:Y.159, A:Y.159 Salt bridges: A:E.155 pi-Stacking: A:H.116

1 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Non-covalent)

NAG.2: 1 residues within 4Å: Chain A: N.86 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.86

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Dulberger, C.L. et al., Human Leukocyte Antigen F Presents Peptides and Regulates Immunity through Interactions with NK Cell Receptors. Immunity (2017)

Release Date

2017-06-14

Peptides

cDNA FLJ39643 fis, clone SMINT2004023, highly similar to HLA class I histocompatibility antigen, alphachain F: A
Beta-2-microglobulin: B
Leukocyte immunoglobulin-like receptor subfamily B member 1: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
D

cDNA FLJ39643 fis, clone SMINT2004023, highly similar to HLA class I histocompatibility antigen, alphachain F

Beta-2-microglobulin

Leukocyte immunoglobulin-like receptor subfamily B member 1

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