SMTL ID : 5ksa.1

Bel602-DQ8.5-glia-gamma1 complex

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

hetero-1-1-1-1-1-mer

Ligands

1 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.1: 4 residues within 4Å: Chain A: V.118, N.120, E.168, W.170 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:V.118 Hydrogen bonds: A:N.120

1 x CA: CALCIUM ION(Non-covalent)

CA.2: 1 residues within 4Å: Chain A: S.47 5 PLIP interactions: 1 interactions with chain A, 4 Ligand-Water interactions Metal complexes: A:S.47, H2O.2, H2O.4, H2O.5, H2O.6

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Petersen, J. et al., Diverse T Cell Receptor Gene Usage in HLA-DQ8-Associated Celiac Disease Converges into a Consensus Binding Solution. Structure (2016)

Release Date

2016-09-21

Peptides

HLA class II histocompatibility antigen, DQ alpha 1 chain: A
HLA class II histocompatibility antigen, DQ beta 1 chain: B
Bel602 alpha TRAV20*01: C
Bel602 beta TRBV9*01: D
DQ8.5-glia-gamma1 peptide: E

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
J

HLA class II histocompatibility antigen, DQ alpha 1 chain

HLA class II histocompatibility antigen, DQ beta 1 chain

Bel602 alpha TRAV20*01

Bel602 beta TRBV9*01

DQ8.5-glia-gamma1 peptide

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