SMTL ID : 5ksb.2 (1 other biounit)

T15-DQ8.5-glia-gamma1 complex

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.90 Å

Oligo State

hetero-1-1-1-1-1-mer

Ligands

1 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.1: 4 residues within 4Å: Chain A: V.118, N.120, E.168, W.170 No protein-ligand interaction detected (PLIP)

2 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.2: 2 residues within 4Å: Chain A: S.79, N.80 No protein-ligand interaction detected (PLIP) NAG.3: 2 residues within 4Å: Chain B: N.44, E.47 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:N.44, B:E.47

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Petersen, J. et al., Diverse T Cell Receptor Gene Usage in HLA-DQ8-Associated Celiac Disease Converges into a Consensus Binding Solution. Structure (2016)

Release Date

2016-09-21

Peptides

HLA class II histocompatibility antigen, DQ alpha 1 chain: A
HLA class II histocompatibility antigen, DQ beta 1 chain: B
T15 TCR alpha TRAV20*02: C
T15 TCR beta TRBV9*01: D
DQ8.5-glia-gamma1 peptide: E

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

B
D

C
E

D
F

E
I

HLA class II histocompatibility antigen, DQ alpha 1 chain

HLA class II histocompatibility antigen, DQ beta 1 chain

T15 TCR alpha TRAV20*02

T15 TCR beta TRBV9*01

DQ8.5-glia-gamma1 peptide

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