SMTL ID : 5ksq.1

Stationary phase survival protein E (SurE) from Xylella fastidiosa

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.63 Å

Oligo State

homo-dimer

Ligands

2 x MN: MANGANESE (II) ION(Non-covalent)

MN.1: 5 residues within 4Å: Chain A: D.8, D.9, S.40, N.92 Ligands: PO4.3 3 PLIP interactions: 2 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.8, A:D.9, H2O.1 MN.5: 5 residues within 4Å: Chain B: D.8, D.9, S.40, N.92 Ligands: PO4.7 2 PLIP interactions: 2 interactions with chain B Metal complexes: B:D.8, B:D.9

3 x IOD: IODIDE ION(Non-functional Binders)

IOD.2: 3 residues within 4Å: Chain A: Y.241, Q.242 Chain B: H.235 Ligand excluded by PLIP IOD.4: 1 residues within 4Å: Chain B: N.44 Ligand excluded by PLIP IOD.6: 2 residues within 4Å: Chain A: H.235 Chain B: Y.241 Ligand excluded by PLIP

2 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.3: 8 residues within 4Å: Chain A: D.8, S.40, N.92, N.96, S.104, G.105, T.106 Ligands: MN.1 9 PLIP interactions: 9 interactions with chain A Hydrogen bonds: A:D.8, A:S.40, A:N.92, A:T.94, A:N.96, A:G.105, A:T.106, A:T.106 Water bridges: A:T.94 PO4.7: 8 residues within 4Å: Chain B: D.8, S.40, N.92, N.96, S.104, G.105, T.106 Ligands: MN.5 7 PLIP interactions: 7 interactions with chain B Hydrogen bonds: B:S.40, B:N.92, B:N.96, B:S.104, B:G.105, B:T.106, B:T.106

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Machado, A.T.P. et al., Conformational variability of the stationary phase survival protein E from Xylella fastidiosa revealed by X-ray crystallography, small-angle X-ray scattering studies, and normal mode analysis. Proteins (2017)

Release Date

2017-07-19

Peptides

5'-nucleotidase SurE: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

5'-nucleotidase SurE

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