SMTL ID : 5kss.1

Stationary phase survival protein E (SurE) from Xylella fastidiosa - XFSurE-Ds (Dimer Smaller)

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.82 Å

Oligo State

homo-tetramer

Ligands

4 x MN: MANGANESE (II) ION(Non-covalent)

MN.1: 6 residues within 4Å: Chain A: D.8, D.9, S.40, N.92, N.93 Ligands: CL.4 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:D.9, A:S.40 MN.6: 6 residues within 4Å: Chain B: D.8, D.9, S.40, N.92, N.93 Ligands: CL.7 2 PLIP interactions: 2 interactions with chain B Metal complexes: B:D.9, B:S.40 MN.8: 6 residues within 4Å: Chain C: D.8, D.9, S.40, N.92, N.93 Ligands: CL.11 2 PLIP interactions: 2 interactions with chain C Metal complexes: C:D.9, C:S.40 MN.13: 6 residues within 4Å: Chain D: D.8, D.9, S.40, N.92, N.93 Ligands: CL.14 2 PLIP interactions: 2 interactions with chain D Metal complexes: D:D.9, D:S.40

6 x IOD: IODIDE ION(Non-functional Binders)

IOD.2: 2 residues within 4Å: Chain A: N.44 Chain B: N.44 Ligand excluded by PLIP IOD.3: 2 residues within 4Å: Chain A: Y.241 Chain B: H.235 Ligand excluded by PLIP IOD.5: 3 residues within 4Å: Chain A: H.235 Chain B: Y.241, Q.242 Ligand excluded by PLIP IOD.9: 2 residues within 4Å: Chain C: N.44 Chain D: N.44 Ligand excluded by PLIP IOD.10: 2 residues within 4Å: Chain C: Y.241 Chain D: H.235 Ligand excluded by PLIP IOD.12: 3 residues within 4Å: Chain C: H.235 Chain D: Y.241, Q.242 Ligand excluded by PLIP

4 x CL: CHLORIDE ION(Non-functional Binders)

CL.4: 6 residues within 4Å: Chain A: D.8, N.92, N.96, S.104, T.106 Ligands: MN.1 Ligand excluded by PLIP CL.7: 7 residues within 4Å: Chain B: D.8, N.92, N.96, S.104, G.105, T.106 Ligands: MN.6 Ligand excluded by PLIP CL.11: 6 residues within 4Å: Chain C: D.8, N.92, N.96, S.104, T.106 Ligands: MN.8 Ligand excluded by PLIP CL.14: 7 residues within 4Å: Chain D: D.8, N.92, N.96, S.104, G.105, T.106 Ligands: MN.13 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Machado, A.T.P. et al., Conformational variability of the stationary phase survival protein E from Xylella fastidiosa revealed by X-ray crystallography, small-angle X-ray scattering studies, and normal mode analysis. Proteins (2017)

Release Date

2017-07-19

Peptides

5'-nucleotidase SurE: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
A

D
B

5'-nucleotidase SurE

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