SMTL ID : 5ksz.1

hMiro EF hand and cGTPase domains in the GMPPCP-bound state

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.50 Å

Oligo State

monomer

Ligands

2 x MG: MAGNESIUM ION(Non-covalent)

MG.1: 5 residues within 4Å: Chain A: D.21, D.23, D.25, T.27, E.32 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.21, A:D.25, A:T.27, A:E.32, H2O.1 MG.2: 5 residues within 4Å: Chain A: D.141, D.143, D.145, A.147, E.152 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:D.141, A:D.143, A:D.145, A:A.147, A:E.152

1 x GCP: PHOSPHOMETHYLPHOSPHONIC ACID GUANYLATE ESTER(Non-covalent)

GCP.3: 17 residues within 4Å: Chain A: V.250, K.251, N.252, C.253, G.254, K.255, S.256, G.257, L.267, K.271, D.299, K.352, D.354, L.355, T.382, C.383, N.384 18 PLIP interactions: 18 interactions with chain A Hydrogen bonds: A:K.251, A:N.252, A:C.253, A:G.254, A:K.255, A:K.255, A:K.255, A:S.256, A:G.257, A:K.271, A:K.271, A:K.352, A:K.352, A:T.382, A:C.383, A:N.384, A:N.384 Salt bridges: A:D.354

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.4: 6 residues within 4Å: Chain A: R.15, I.19, F.98, Y.110, G.206, I.212 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Klosowiak, J.L. et al., Structural insights into Parkin substrate lysine targeting from minimal Miro substrates. Sci Rep (2016)

Release Date

2016-09-21

Peptides

Mitochondrial Rho GTPase 1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Mitochondrial Rho GTPase 1

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