SMTL ID : 5ktx.1

CREBBP bromodomain in complex with Cpd59 ((S)-1-(3-((2-fluoro-4-(1-methyl-1H-pyrazol-4-yl)phenyl)amino)-1-(tetrahydrofuran-3-yl)-6,7-dihydro-1H-pyrazolo[4,3-c]pyridin-5(4H)-yl)ethanone)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.27 Å

Oligo State

monomer

Ligands

1 x 6XH: 1-[3-[[2-fluoranyl-4-(1-methylpyrazol-4-yl)phenyl]amino]-1-[(3~{S})-oxolan-3-yl]-6,7-dihydro-4~{H}-pyrazolo[4,3-c]pyridin-5-yl]ethanone(Non-covalent)

6XH.1: 13 residues within 4Å: Chain A: P.24, L.27, P.28, F.29, Q.31, V.33, L.38, I.40, Y.43, N.86, R.91, V.92, F.95 12 PLIP interactions: 12 interactions with chain A Hydrophobic interactions: A:P.28, A:F.29, A:V.33, A:L.38, A:I.40, A:V.92 Hydrogen bonds: A:N.86, A:R.91 Water bridges: A:P.28, A:R.91, A:R.91 Halogen bonds: A:Q.31

2 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.2: 4 residues within 4Å: Chain A: Q.22, D.23, P.24, E.25 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:Q.22, A:D.23 Water bridges: A:K.98 EDO.3: 3 residues within 4Å: Chain A: R.9, M.13, P.14 2 PLIP interactions: 2 interactions with chain A Water bridges: A:R.9, A:Q.10

1 x DMS: DIMETHYL SULFOXIDE(Non-functional Binders)

DMS.4: 3 residues within 4Å: Chain A: W.69, V.72, M.111 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Crawford, T.D. et al., Discovery of a Potent and Selective in Vivo Probe (GNE-272) for the Bromodomains of CBP/EP300. J. Med. Chem. (2016)

Release Date

2016-11-02

Peptides

CREB-binding protein: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

CREB-binding protein

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