SMTL ID : 5kvd.1

Zika specific antibody, ZV-2, bound to ZIKA envelope DIII

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.65 Å

Oligo State

hetero-oligomer

Ligands

2 x NA: SODIUM ION(Non-functional Binders)

NA.1: 1 residues within 4Å: Chain B: K.205 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:K.205 NA.4: 1 residues within 4Å: Chain C: V.170 2 PLIP interactions: 2 interactions with chain C Water bridges: C:V.170, C:V.170

1 x MES: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID(Non-covalent)

MES.2: 8 residues within 4Å: Chain A: I.62, T.63, A.64 Chain C: W.33, F.52, S.55, R.57, Y.100 4 PLIP interactions: 1 interactions with chain A, 3 interactions with chain C Hydrogen bonds: A:A.64, C:S.55, C:S.55 Water bridges: C:W.33

1 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.3: 1 residues within 4Å: Chain C: K.23 1 PLIP interactions: 1 interactions with chain C Hydrogen bonds: C:K.23

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zhao, H. et al., Structural Basis of Zika Virus-Specific Antibody Protection. Cell (2016)

Release Date

2016-08-03

Peptides

Zika Envelope DIII: A
ZV-2 Antibody Fab Light Chain: B
ZV-2 Antibody Fab Heavy Chain: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
E

B
L

C
H

Zika Envelope DIII

ZV-2 Antibody Fab Light Chain

ZV-2 Antibody Fab Heavy Chain

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