SMTL ID : 5kvf.1

Zika specific antibody, ZV-64, bound to ZIKA envelope DIII

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.40 Å

Oligo State

hetero-oligomer

Ligands

5 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 3 residues within 4Å: Chain A: H.104, S.106, G.107 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:G.107 GOL.2: 3 residues within 4Å: Chain C: E.10, V.18, K.19 3 PLIP interactions: 3 interactions with chain C Hydrogen bonds: C:K.19 Water bridges: C:E.10, C:E.10 GOL.3: 5 residues within 4Å: Chain C: K.38, E.46, F.64, K.67, D.90 4 PLIP interactions: 4 interactions with chain C Hydrogen bonds: C:K.38, C:E.46, C:K.67, C:K.67 GOL.4: 7 residues within 4Å: Chain C: S.91, A.92, V.93, S.114, V.115, T.116, E.154 5 PLIP interactions: 5 interactions with chain C Hydrogen bonds: C:A.92, C:A.92, C:V.115, C:E.154 Water bridges: C:Y.181 GOL.5: 3 residues within 4Å: Chain C: P.7, G.8, P.206 3 PLIP interactions: 3 interactions with chain C Hydrogen bonds: C:G.8 Water bridges: C:A.9, C:P.206

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zhao, H. et al., Structural Basis of Zika Virus-Specific Antibody Protection. Cell (2016)

Release Date

2016-08-03

Peptides

Zika envelope DIII: A
ZV-64 Antibody Fab Light Chain: B
ZV-64 Antibody Fab Heavy Chain: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
E

B
L

C
H

Zika envelope DIII

ZV-64 Antibody Fab Light Chain

ZV-64 Antibody Fab Heavy Chain

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