SMTL ID : 5kvw.1

T. danielli thaumatin at 100K, Data set 1

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.59 Å

Oligo State

monomer

Ligands

1 x TLA: L(+)-TARTARIC ACID(Non-covalent)

TLA.1: 3 residues within 4Å: Chain A: R.29, E.35, S.36 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:R.29, A:R.29, A:S.36, A:S.36, A:S.36 Salt bridges: A:R.29

3 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 8 residues within 4Å: Chain A: I.105, D.147, A.148, C.149, Y.157, S.170, F.173, S.182 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:I.105, A:D.147, A:A.148, A:Y.157 GOL.3: 8 residues within 4Å: Chain A: G.47, E.89, F.90, S.91, Y.99, D.101, T.190 Ligands: GOL.4 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:S.91, A:D.101, A:D.101, A:T.190 Water bridges: A:F.90 GOL.4: 5 residues within 4Å: Chain A: E.89, I.105, F.181, V.184 Ligands: GOL.3 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:E.89, A:V.184 Water bridges: A:S.103

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Russi, S. et al., Conformational variation of proteins at room temperature is not dominated by radiation damage. J Synchrotron Radiat (2017)

Release Date

2016-09-07

Peptides

Thaumatin-1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Thaumatin-1

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