SMTL ID : 5kzd.1

N-acetylneuraminate lyase from methicillin-resistant Staphylococcus aureus with bound sialic acid alditol

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.33 Å

Oligo State

homo-tetramer

Ligands

4 x RCJ: (2~{S},4~{S},5~{R},6~{R},7~{S},8~{R})-5-acetamido-2,4,6,7,8,9-hexakis(oxidanyl)nonanoic acid(Non-covalent)

RCJ.1: 17 residues within 4Å: Chain A: A.11, Y.44, G.47, S.48, S.49, K.165, G.189, F.190, D.191, E.192, I.206, G.207, S.208, I.243, L.247, I.251, Y.252 14 PLIP interactions: 14 interactions with chain A Hydrogen bonds: A:S.48, A:S.49, A:S.49, A:K.165, A:D.191, A:D.191, A:E.192, A:I.206, A:I.206, A:S.208, A:S.208, A:S.208 Water bridges: A:G.47 Salt bridges: A:K.165 RCJ.2: 16 residues within 4Å: Chain B: A.11, Y.44, G.47, S.48, S.49, Y.137, K.165, G.189, D.191, E.192, I.206, G.207, S.208, L.247, I.251, Y.252 13 PLIP interactions: 13 interactions with chain B Hydrophobic interactions: B:A.11 Hydrogen bonds: B:S.48, B:S.49, B:Y.137, B:K.165, B:D.191, B:D.191, B:I.206, B:I.206, B:S.208, B:S.208 Water bridges: B:G.47 Salt bridges: B:K.165 RCJ.3: 17 residues within 4Å: Chain C: A.11, Y.44, G.47, S.48, S.49, Y.137, K.165, G.189, F.190, D.191, E.192, I.206, G.207, S.208, L.247, I.251, Y.252 14 PLIP interactions: 14 interactions with chain C Hydrophobic interactions: C:A.11 Hydrogen bonds: C:S.48, C:S.49, C:Y.137, C:K.165, C:D.191, C:D.191, C:E.192, C:I.206, C:I.206, C:S.208, C:S.208, C:Y.252 Salt bridges: C:K.165 RCJ.4: 17 residues within 4Å: Chain D: A.11, Y.44, G.47, S.48, S.49, Y.137, K.165, G.189, F.190, D.191, E.192, I.206, G.207, S.208, L.247, I.251, Y.252 11 PLIP interactions: 11 interactions with chain D Hydrogen bonds: D:S.48, D:S.49, D:Y.137, D:K.165, D:D.191, D:D.191, D:I.206, D:S.208, D:S.208, D:Y.252 Salt bridges: D:K.165

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

North, R.A. et al., Structure and inhibition of N-acetylneuraminate lyase from methicillin-resistant Staphylococcus aureus. FEBS Lett. (2016)

Release Date

2017-01-11

Peptides

N-acetylneuraminate lyase: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

N-acetylneuraminate lyase

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