SMTL ID : 5l1f.1

AMPA subtype ionotropic glutamate receptor GluA2 in complex with noncompetitive inhibitor Perampanel

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 4.00 Å

Oligo State

homo-tetramer

Ligands

4 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.1: 4 residues within 4Å: Chain A: Q.328, N.335, K.337, N.346 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:Q.328, A:N.335, A:K.337 NAG.3: 4 residues within 4Å: Chain B: Q.328, N.335, K.337, N.346 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:Q.328, B:N.335, B:K.337 NAG.5: 4 residues within 4Å: Chain C: Q.328, N.335, K.337, N.346 2 PLIP interactions: 2 interactions with chain C Hydrogen bonds: C:Q.328, C:Q.328 NAG.7: 4 residues within 4Å: Chain D: Q.328, N.335, K.337, N.346 3 PLIP interactions: 3 interactions with chain D Hydrogen bonds: D:Q.328, D:E.330, D:N.346

4 x 6ZP: 2-(6'-oxo-1'-phenyl[1',6'-dihydro[2,3'-bipyridine]]-5'-yl)benzonitrile(Non-covalent)

6ZP.2: 12 residues within 4Å: Chain A: K.502, P.503, S.507, F.508, L.509, D.510, P.511, Y.588, F.595, S.760, N.763 Chain B: S.757 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:F.508, A:F.595 Hydrogen bonds: A:S.507 pi-Stacking: A:F.595 6ZP.4: 12 residues within 4Å: Chain B: S.501, K.502, S.507, F.508, L.509, D.510, P.511, Y.588, L.592, F.595, S.762, N.763 6 PLIP interactions: 6 interactions with chain B Hydrophobic interactions: B:F.508, B:F.595, B:N.763 Hydrogen bonds: B:S.507, B:Y.588 pi-Stacking: B:F.595 6ZP.6: 11 residues within 4Å: Chain C: K.502, S.507, F.508, L.509, D.510, P.511, Y.588, F.595, S.760, N.763 Chain D: S.757 6 PLIP interactions: 6 interactions with chain C Hydrophobic interactions: C:F.508, C:D.510, C:F.595, C:N.763 Hydrogen bonds: C:S.507 pi-Stacking: C:F.595 6ZP.8: 13 residues within 4Å: Chain A: S.757 Chain D: K.502, P.503, S.507, F.508, D.510, P.511, Y.588, N.591, L.592, F.595, S.760, N.763 7 PLIP interactions: 7 interactions with chain D Hydrophobic interactions: D:F.508, D:D.510, D:P.511, D:F.595, D:F.595 Hydrogen bonds: D:S.507, D:Y.588

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Yelshanskaya, M.V. et al., Structural Bases of Noncompetitive Inhibition of AMPA-Subtype Ionotropic Glutamate Receptors by Antiepileptic Drugs. Neuron (2016)

Release Date

2016-10-19

Peptides

Glutamate receptor 2: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

Membrane

We predict this structure to be a membrane protein.
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Glutamate receptor 2

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