SMTL ID : 5l7d.1 (1 other biounit)

Structure of human Smoothened in complex with cholesterol

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 3.20 Å

Oligo State

monomer

Ligands

2 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.1: 2 residues within 4Å: Chain A: K.155, N.157 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:K.155 NAG.2: 5 residues within 4Å: Chain A: E.129, R.130, C.563, N.566 Ligands: CLR.3 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:E.129

1 x CLR: CHOLESTEROL(Non-covalent)

CLR.3: 14 residues within 4Å: Chain A: D.64, K.74, L.77, W.78, G.80, L.81, N.83, I.125, R.130, V.179, L.562, A.565, I.569 Ligands: NAG.2 10 PLIP interactions: 10 interactions with chain A Hydrophobic interactions: A:K.74, A:L.77, A:W.78, A:W.78, A:R.130, A:V.179, A:L.562, A:A.565, A:I.569 Hydrogen bonds: A:D.64

2 x NA: SODIUM ION(Non-functional Binders)

NA.4: 5 residues within 4Å: Chain A: T.59, A.62, G.63, S.65, D.66 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:A.62 NA.5: 5 residues within 4Å: Chain A: E.274, P.275, E.279, T.280, L.281 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:E.274

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Byrne, E.F. et al., Structural basis of Smoothened regulation by its extracellular domains. Nature (2016)

Release Date

2016-07-20

Peptides

Smoothened homolog,Soluble cytochrome b562,Smoothened homolog: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Membrane

We predict this structure to be a membrane protein.
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Smoothened homolog,Soluble cytochrome b562,Smoothened homolog

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