SMTL ID : 7zi0.1 (1 other biounit)

Structure of human Smoothened in complex with cholesterol and SAG

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 3.00 Å

Oligo State

monomer

Ligands

1 x V0S: 3-chloro-N-[trans-4-(methylamino)cyclohexyl]-N-{[3-(pyridin-4-yl)phenyl]methyl}-1-benzothiophene-2-carboxamide(Non-covalent)

V0S.1: 17 residues within 4Å: Chain A: I.184, N.188, L.190, F.191, M.270, L.272, D.353, Y.363, K.364, H.543, D.546, Q.550, W.553, E.554, F.557, P.586, E.591 12 PLIP interactions: 12 interactions with chain A Hydrophobic interactions: A:I.184, A:L.272, A:Y.363, A:Y.363, A:Y.363, A:K.364, A:K.364, A:F.557, A:F.557, A:P.586 Hydrogen bonds: A:N.188, A:E.591

1 x CLR: CHOLESTEROL(Non-covalent)

CLR.2: 14 residues within 4Å: Chain A: D.64, K.74, L.77, W.78, G.80, L.81, N.83, I.125, V.126, R.130, V.179, L.562, A.565, I.569 12 PLIP interactions: 12 interactions with chain A Hydrophobic interactions: A:K.74, A:L.77, A:L.77, A:W.78, A:W.78, A:N.83, A:V.126, A:V.179, A:L.562, A:A.565, A:I.569 Hydrogen bonds: A:D.64

1 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.3: 2 residues within 4Å: Chain A: K.155, N.157 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:K.155

2 x NA: SODIUM ION(Non-functional Binders)

NA.4: 5 residues within 4Å: Chain A: T.59, L.60, A.62, G.63, S.65 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:A.62 NA.5: 6 residues within 4Å: Chain A: E.274, P.275, T.276, E.279, T.280, L.281 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:T.276, A:E.279

1 x MPG: [(Z)-octadec-9-enyl] (2R)-2,3-bis(oxidanyl)propanoate(Non-covalent)

MPG.6: 3 residues within 4Å: Chain A: V.342, A.346, V.347 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:V.342, A:A.346

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kinnebrew, M. et al., Patched 1 regulates Smoothened by controlling sterol binding to its extracellular cysteine-rich domain. Sci Adv (2022)

Release Date

2022-06-15

Peptides

Smoothened homolog,Soluble cytochrome b562: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Membrane

We predict this structure to be a membrane protein.
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Smoothened homolog,Soluble cytochrome b562

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