SMTL ID : 5l7e.1

MCR IN COMPLEX WITH ligand

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.86 Å

Oligo State

hetero-1-1-mer

Ligands

1 x NHE: 2-[N-CYCLOHEXYLAMINO]ETHANE SULFONIC ACID(Non-covalent)

NHE.1: 4 residues within 4Å: Chain A: E.36, I.37, V.38, Y.39 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:I.37, A:Y.39, A:Y.39 Hydrogen bonds: A:I.37, A:Y.39

1 x MPD: (4S)-2-METHYL-2,4-PENTANEDIOL(Non-functional Binders)

MPD.2: 9 residues within 4Å: Chain A: E.34, P.35, Q.64, Q.67, V.68, L.98, A.101, R.105, K.161 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:Q.67, A:L.98, A:K.161 Hydrogen bonds: A:E.34, A:R.105, A:K.161 Water bridges: A:Q.64, A:Q.64

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.3: 3 residues within 4Å: Chain A: R.149, Q.211, K.214 3 PLIP interactions: 3 interactions with chain A Water bridges: A:R.149 Salt bridges: A:R.149, A:K.214

2 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.4: 7 residues within 4Å: Chain A: Q.113, F.114, F.123, N.124, E.125, M.128, H.141 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:F.123 Water bridges: A:E.125 EDO.5: 4 residues within 4Å: Chain A: R.192, W.206, F.209, Y.210 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:R.192

1 x 6Q0: ~{N}-[[4-(3,5-dimethyl-1,2-oxazol-4-yl)phenyl]methyl]benzenesulfonamide(Non-covalent)

6Q0.6: 18 residues within 4Å: Chain A: L.57, N.58, L.60, A.61, Q.64, W.94, M.95, L.98, S.99, L.102, R.105, F.117, M.133, M.140, L.226, F.229, C.230, L.248 10 PLIP interactions: 10 interactions with chain A Hydrophobic interactions: A:L.57, A:L.60, A:A.61, A:W.94, A:L.98 Hydrogen bonds: A:R.105 Water bridges: A:L.102, A:T.233, A:T.233 pi-Stacking: A:F.117

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Nordqvist, A. et al., Structure-Based Drug Design of Mineralocorticoid Receptor Antagonists to Explore Oxosteroid Receptor Selectivity. ChemMedChem (2017)

Release Date

2016-12-07

Peptides

Mineralocorticoid receptor: A
NCOA1 peptide: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Mineralocorticoid receptor

NCOA1 peptide

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