SMTL ID : 5l8e.1 (1 other biounit)

Structure of UAF1

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.30 Å

Oligo State

monomer

Ligands

1 x UNK- UNK- UNK- UNK- UNK: Unknown(Non-covalent)

UNK-UNK-UNK-UNK-UNK.1: 6 residues within 4Å: Chain A: N.157, T.158, V.159, T.160, T.161 Ligands: GOL.6 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:V.159 Hydrogen bonds: A:N.157, A:N.157, A:V.159, A:V.159, A:T.161, A:T.161

7 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 3 residues within 4Å: Chain A: R.50, T.317 Ligands: GOL.3 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.50, A:R.50 GOL.3: 6 residues within 4Å: Chain A: N.31, R.50, W.77, L.424, K.425 Ligands: GOL.2 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:N.31, A:R.50 Water bridges: A:G.427 GOL.4: 7 residues within 4Å: Chain A: H.73, C.109, M.110, S.111, T.112 Ligands: GOL.6, GOL.7 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:C.109, A:T.112 GOL.5: 5 residues within 4Å: Chain A: K.318, S.319, T.320, G.359, G.360 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:S.319, A:T.320 Water bridges: A:G.359 GOL.6: 4 residues within 4Å: Chain A: S.111, T.112 Ligands: UNK-UNK-UNK-UNK-UNK.1, GOL.4 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:T.112, A:T.112 GOL.7: 7 residues within 4Å: Chain A: H.73, K.100, R.114, T.524, F.526, R.527 Ligands: GOL.4 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:H.73, A:K.100, A:R.527 GOL.8: 4 residues within 4Å: Chain A: K.168, R.193, K.202, K.205 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:K.168, A:R.193, A:R.193, A:K.205

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Dharadhar, S. et al., A conserved two-step binding for the UAF1 regulator to the USP12 deubiquitinating enzyme. J.Struct.Biol. (2016)

Release Date

2016-09-28

Peptides

WD repeat-containing protein 48: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

WD repeat-containing protein 48

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