SMTL ID : 5l8u.1

Crystal Structure of BAZ2B bromodomain in complex with 3-amino-2-methylpyridine derivative 5

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.85 Å

Oligo State

monomer

Ligands

1 x 6RS: ~{N}-[(1~{S})-1-(3,4-dihydro-2~{H}-1,5-benzodioxepin-7-yl)ethyl]-2-methyl-pyridin-3-amine(Non-covalent)

6RS.1: 10 residues within 4Å: Chain A: W.32, P.33, F.34, V.38, Y.46, F.88, N.89, I.95 Ligands: PGE.2, PGE.3 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:W.32, A:P.33, A:F.34, A:I.95, A:I.95 Hydrogen bonds: A:P.33, A:N.89

2 x PGE: TRIETHYLENE GLYCOL(Non-functional Binders)

PGE.2: 1 residues within 4Å: Ligands: 6RS.1 No protein-ligand interaction detected (PLIP) PGE.3: 2 residues within 4Å: Chain A: L.42 Ligands: 6RS.1 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:L.42 Water bridges: A:N.89

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Marchand, J.R. et al., Derivatives of 3-Amino-2-methylpyridine as BAZ2B Bromodomain Ligands: In Silico Discovery and in Crystallo Validation. J. Med. Chem. (2016)

Release Date

2016-10-26

Peptides

Bromodomain adjacent to zinc finger domain protein 2B: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Bromodomain adjacent to zinc finger domain protein 2B

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