SMTL ID : 5l98.1

Crystal Structure of BAZ2B bromodomain in complex with 3-amino-2-methylpyridine derivative 4

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.26 Å

Oligo State

monomer

Ligands

1 x 6RY: ~{N}-[(1~{S})-1-(2,3-dihydro-1,4-benzodioxin-6-yl)ethyl]-2-methyl-pyridin-3-amine(Non-covalent)

6RY.1: 9 residues within 4Å: Chain A: W.32, P.33, F.34, V.38, F.88, N.89, I.95 Ligands: EDO.2, EDO.3 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:W.32, A:F.34, A:V.38, A:I.95, A:I.95 Hydrogen bonds: A:P.33, A:N.89

2 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.2: 1 residues within 4Å: Ligands: 6RY.1 No protein-ligand interaction detected (PLIP) EDO.3: 1 residues within 4Å: Ligands: 6RY.1 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Marchand, J.R. et al., Derivatives of 3-Amino-2-methylpyridine as BAZ2B Bromodomain Ligands: In Silico Discovery and in Crystallo Validation. J. Med. Chem. (2016)

Release Date

2016-10-26

Peptides

Bromodomain adjacent to zinc finger domain protein 2B: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Bromodomain adjacent to zinc finger domain protein 2B

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