SMTL ID : 5l9k.2 (1 other biounit)

OCEANOBACILLUS IHEYENSIS MACRODOMAIN WITH ADPR

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.77 Å

Oligo State

monomer

Ligands

1 x AR6: [(2R,3S,4R,5R)-5-(6-AMINOPURIN-9-YL)-3,4-DIHYDROXY-OXOLAN-2-YL]METHYL [HYDROXY-[[(2R,3S,4R,5S)-3,4,5-TRIHYDROXYOXOLAN-2-YL]METHOXY]PHOSPHORYL] HYDROGEN PHOSPHATE(Non-covalent)

AR6.1: 22 residues within 4Å: Chain A: G.38, D.39, I.40, A.51, A.52, N.53, G.58, G.59, G.60, G.61, V.62, D.63, A.65, S.151, S.153, T.154, G.155, V.156, Y.157, F.189, D.193 Ligands: GOL.2 21 PLIP interactions: 21 interactions with chain A Hydrogen bonds: A:D.39, A:I.40, A:N.53, A:G.60, A:V.62, A:D.63, A:S.153, A:S.153, A:T.154, A:G.155, A:V.156, A:Y.157, A:Y.157, A:D.193, A:D.193 Water bridges: A:G.60, A:D.63, A:S.151, A:F.189 pi-Stacking: A:F.189, A:F.189

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 6 residues within 4Å: Chain A: T.154, I.161, R.192, D.193 Ligands: AR6.1, GOL.3 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:T.154, A:R.192, A:R.192 Water bridges: A:T.154 GOL.3: 6 residues within 4Å: Chain A: Y.159, P.160, I.161, H.162, R.192 Ligands: GOL.2 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:I.161, A:H.162, A:H.162, A:R.192 Water bridges: A:T.154, A:Y.159

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zapata-Perez, R. et al., Structural and functional analysis of Oceanobacillus iheyensis macrodomain reveals a network of waters involved in substrate binding and catalysis. Open Biol (2017)

Release Date

2017-05-03

Peptides

MACROD-TYPE MACRODOMAIN: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

MACROD-TYPE MACRODOMAIN

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