SMTL ID : 5law.1

Novel Spiro[3H-indole-3,2 -pyrrolidin]-2(1H)-one Inhibitors of the MDM2-p53 Interaction: HDM2 (MDM2) IN COMPLEX WITH COMPOUND 14

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.64 Å

Oligo State

monomer

Ligands

1 x 6SJ: 2-[(3~{S},3'~{a}~{S},6'~{S},6'~{a}~{S})-6-chloranyl-6'-(3-chlorophenyl)-4'-(cyclopropylmethyl)-2-oxidanylidene-spiro[1~{H}-indole-3,5'-3,3~{a},6,6~{a}-tetrahydro-2~{H}-pyrrolo[3,2-b]pyrrole]-1'-yl]ethanoic acid(Non-covalent)

6SJ.1: 14 residues within 4Å: Chain A: L.37, L.40, G.41, I.44, M.45, Y.50, F.69, F.74, V.76, K.77, H.79, I.82, Y.83 Ligands: SO4.2 12 PLIP interactions: 12 interactions with chain A Hydrophobic interactions: A:L.37, A:I.44, A:I.44, A:Y.50, A:F.74, A:V.76 Hydrogen bonds: A:L.37, A:G.41, A:V.76 Salt bridges: A:K.77, A:H.79 Halogen bonds: A:H.79

3 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 1 residues within 4Å: Ligands: 6SJ.1 No protein-ligand interaction detected (PLIP) SO4.3: 4 residues within 4Å: Chain A: E.78, H.79, R.80, K.81 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:H.79, A:R.80, A:K.81 Salt bridges: A:R.80 SO4.4: 3 residues within 4Å: Chain A: I.2, P.3, A.4 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:A.4

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Gollner, A. et al., Discovery of Novel Spiro[3H-indole-3,2'-pyrrolidin]-2(1H)-one Compounds as Chemically Stable and Orally Active Inhibitors of the MDM2-p53 Interaction. J. Med. Chem. (2016)

Release Date

2016-11-02

Peptides

E3 ubiquitin-protein ligase Mdm2: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

E3 ubiquitin-protein ligase Mdm2

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