SMTL ID : 5lcj.1

In-Gel Activity-Based Protein Profiling of a Clickable Covalent Erk 1/2 Inhibitor

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.78 Å

Oligo State

monomer

Ligands

1 x 6TS: [(1~{R},4~{Z})-cyclooct-4-en-1-yl] ~{N}-[4-[4-[[5-chloranyl-4-[[2-(propanoylamino)phenyl]amino]pyrimidin-2-yl]amino]pyridin-2-yl]but-3-ynyl]carbamate(Covalent)

6TS.1: 17 residues within 4Å: Chain A: I.39, G.40, E.41, G.42, V.47, A.60, Q.113, D.114, L.115, M.116, E.117, K.122, S.161, N.162, L.164, C.174, D.175 10 PLIP interactions: 10 interactions with chain A Hydrophobic interactions: A:I.39, A:V.47, A:V.47, A:L.164 Hydrogen bonds: A:M.116, A:M.116, A:K.122 Water bridges: A:A.43, A:S.161 Halogen bonds: A:Q.113

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 5 residues within 4Å: Chain A: T.71, R.75, L.178, R.180, V.196 6 PLIP interactions: 6 interactions with chain A Water bridges: A:R.75, A:R.78, A:R.156, A:R.180 Salt bridges: A:R.75, A:R.180 SO4.3: 6 residues within 4Å: Chain A: L.124, K.125, T.126, Q.127, H.128, N.232 4 PLIP interactions: 4 interactions with chain A Water bridges: A:K.125, A:T.126, A:H.128, A:N.232

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lebraud, H. et al., In-gel activity-based protein profiling of a clickable covalent ERK1/2 inhibitor. Mol Biosyst (2016)

Release Date

2016-07-20

Peptides

Mitogen-activated protein kinase 1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Mitogen-activated protein kinase 1

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