SMTL ID : 5lck.1

A Clickable Covalent ERK 1/2 Inhibitor

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.89 Å

Oligo State

monomer

Ligands

4 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 4 residues within 4Å: Chain A: Y.187, R.191, R.194, Y.233 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:Y.233 Water bridges: A:Y.187, A:R.191, A:R.194 Salt bridges: A:R.191, A:R.194 SO4.2: 4 residues within 4Å: Chain A: R.67, L.170, R.172, V.188 4 PLIP interactions: 4 interactions with chain A Water bridges: A:R.70, A:R.172 Salt bridges: A:R.67, A:R.172 SO4.3: 6 residues within 4Å: Chain A: L.116, K.117, T.118, Q.119, H.120, N.224 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:Q.119 SO4.4: 2 residues within 4Å: Chain A: K.151, S.153 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:S.153 Water bridges: A:K.151, A:S.153, A:S.153 Salt bridges: A:K.151

1 x 6TT: ~{N}-[2-[[2-[(5-methoxypyridin-3-yl)amino]-5-(trifluoromethyl)pyrimidin-4-yl]amino]phenyl]propanamide(Covalent)

6TT.5: 19 residues within 4Å: Chain A: I.31, G.32, E.33, G.34, V.39, A.52, I.84, Q.105, D.106, L.107, M.108, E.109, D.111, K.114, S.153, N.154, L.156, C.166, D.167 11 PLIP interactions: 11 interactions with chain A Hydrophobic interactions: A:I.31, A:V.39, A:V.39, A:A.52, A:L.156 Hydrogen bonds: A:M.108, A:M.108, A:D.111 Water bridges: A:A.35, A:K.54, A:S.153

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lebraud, H. et al., In-gel activity-based protein profiling of a clickable covalent ERK1/2 inhibitor. Mol Biosyst (2016)

Release Date

2016-07-20

Peptides

Mitogen-activated protein kinase 1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Mitogen-activated protein kinase 1

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