SMTL ID : 5ld2.1

Cryo-EM structure of RecBCD+DNA complex revealing activated nuclease domain

Coordinates

PDB Format

Method

ELECTRON MICROSCOPY

Oligo State

hetero-1-1-1-mer

Ligands

1 x ANP: PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER(Non-covalent)

ANP.1: 15 residues within 4Å: Chain A: G.27, T.28, G.29, K.30, T.31, F.32, E.386, Q.418, W.448, R.449, K.484, G.747, E.749, R.809 Ligands: MG.2 22 PLIP interactions: 22 interactions with chain A Hydrogen bonds: A:G.27, A:T.28, A:G.29, A:K.30, A:K.30, A:T.31, A:F.32, A:E.386, A:Q.418, A:Q.418, A:R.449, A:K.484, A:G.747, A:E.749, A:R.809, A:R.809 Salt bridges: A:R.449 pi-Stacking: A:F.32, A:F.32, A:W.448, A:W.448, A:W.448

1 x MG: MAGNESIUM ION(Non-covalent)

MG.2: 3 residues within 4Å: Chain A: T.31, E.386 Ligands: ANP.1 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:T.31, A:E.386

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wilkinson, M. et al., Mechanism for nuclease regulation in RecBCD. Elife (2016)

Release Date

2016-10-05

Peptides

RecBCD enzyme subunit RecB,RecBCD enzyme subunit RecB,RecBCD enzyme subunit RecB: A
RecBCD enzyme subunit RecC: B
RecBCD enzyme subunit RecD: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

B
C

C
D

RecBCD enzyme subunit RecB,RecBCD enzyme subunit RecB,RecBCD enzyme subunit RecB

RecBCD enzyme subunit RecC

RecBCD enzyme subunit RecD

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