SMTL ID : 5lfo.1

Crystal structure of murine N1-acetylpolyamine oxidase in complex with N1-acetylspermine

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.66 Å

Oligo State

monomer

Ligands

1 x FAD: FLAVIN-ADENINE DINUCLEOTIDE(Non-covalent)

FAD.1: 40 residues within 4Å: Chain A: V.10, G.11, S.12, G.13, I.14, A.15, L.35, E.36, A.37, T.38, G.42, G.43, R.44, I.45, L.57, G.58, A.59, H.60, W.61, H.63, Y.217, P.238, V.239, T.278, V.279, P.280, F.283, F.291, N.312, W.419, Y.424, S.428, Y.429, G.457, E.458, S.466, T.467, T.468, A.471 Ligands: SP5.2 30 PLIP interactions: 30 interactions with chain A Hydrophobic interactions: A:R.44, A:W.419 Hydrogen bonds: A:S.12, A:G.13, A:A.15, A:A.37, A:G.42, A:R.44, A:A.59, A:H.60, A:W.61, A:W.61, A:V.239, A:V.239, A:E.458, A:S.466, A:T.468 Water bridges: A:I.14, A:G.16, A:G.43, A:R.44, A:R.44, A:I.45, A:E.265, A:T.425 Salt bridges: A:R.44, A:R.44 pi-Stacking: A:F.283, A:Y.424, A:Y.429

1 x SP5: N-[3-({4-[(3-aminopropyl)amino]butyl}amino)propyl]acetamide(Non-covalent)

SP5.2: 12 residues within 4Å: Chain A: W.61, H.63, C.185, V.186, F.200, Y.203, N.312, I.357, F.374, Y.429, S.466 Ligands: FAD.1 10 PLIP interactions: 10 interactions with chain A Hydrophobic interactions: A:W.61, A:V.186, A:Y.203, A:I.357, A:F.374 Hydrogen bonds: A:N.312, A:Y.429, A:S.466, A:S.466 Water bridges: A:E.183

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.3: 2 residues within 4Å: Chain A: G.267, R.269 3 PLIP interactions: 3 interactions with chain A Water bridges: A:D.266, A:D.266, A:G.267

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Sjogren, T. et al., The Structure of Murine N(1)-Acetylspermine Oxidase Reveals Molecular Details of Vertebrate Polyamine Catabolism. Biochemistry (2017)

Release Date

2017-03-15

Peptides

Peroxisomal N(1)-acetyl-spermine/spermidine oxidase,Peroxisomal N(1)-acetyl-spermine/spermidine oxidase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Peroxisomal N(1)-acetyl-spermine/spermidine oxidase,Peroxisomal N(1)-acetyl-spermine/spermidine oxidase

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