SMTL ID : 5lgb.1

Crystal structure of murine N1-acetylpolyamine oxidase in complex with MDL72527

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

monomer

Ligands

1 x 6YU: FAD-MDL72527 adduct(Non-covalent)

6YU.1: 42 residues within 4Å: Chain A: V.10, G.11, S.12, G.13, I.14, A.15, L.35, E.36, A.37, T.38, G.42, G.43, R.44, I.45, L.57, G.58, A.59, H.60, W.61, H.63, V.186, D.210, Y.217, P.238, V.239, T.278, V.279, P.280, F.283, F.291, N.312, W.419, Y.424, S.428, Y.429, G.457, E.458, S.466, T.467, T.468, A.471 Ligands: MD2.2 35 PLIP interactions: 35 interactions with chain A Hydrophobic interactions: A:R.44, A:V.186, A:D.210, A:W.419, A:Y.429 Hydrogen bonds: A:S.12, A:G.13, A:A.15, A:A.37, A:G.42, A:R.44, A:A.59, A:H.60, A:W.61, A:W.61, A:H.63, A:Y.217, A:V.239, A:V.239, A:E.458, A:S.466, A:T.468 Water bridges: A:I.14, A:G.16, A:T.38, A:R.44, A:R.44, A:I.45, A:T.425, A:H.469 Salt bridges: A:R.44, A:R.44 pi-Stacking: A:F.283, A:Y.424, A:Y.429

1 x MD2: N,N'-BIS(2,3-BUTADIENYL)-1,4-BUTANE-DIAMINE(Non-covalent)

MD2.2: 8 residues within 4Å: Chain A: H.63, E.130, V.186, F.200, Y.203, Y.429, S.466 Ligands: 6YU.1 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:V.186, A:F.200, A:Y.203, A:Y.429 Hydrogen bonds: A:V.186, A:S.466

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Sjogren, T. et al., The Structure of Murine N(1)-Acetylspermine Oxidase Reveals Molecular Details of Vertebrate Polyamine Catabolism. Biochemistry (2017)

Release Date

2017-08-16

Peptides

Peroxisomal N(1)-acetyl-spermine/spermidine oxidase,Peroxisomal N(1)-acetyl-spermine/spermidine oxidase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Peroxisomal N(1)-acetyl-spermine/spermidine oxidase,Peroxisomal N(1)-acetyl-spermine/spermidine oxidase

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