SMTL ID : 5lhl.2 (1 other biounit)

Crystal Structure of Two-Domain Laccase from Streptomyces griseoflavus

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

homo-trimer

Ligands

12 x CU: COPPER (II) ION(Non-covalent)

CU.1: 4 residues within 4Å: Chain A: H.232, C.289, H.294, M.299 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:H.232, A:C.289, A:H.294 CU.2: 5 residues within 4Å: Chain A: H.237, H.288 Chain C: H.159 Ligands: CU.3, OXY.6 3 PLIP interactions: 2 interactions with chain A, 1 interactions with chain C Metal complexes: A:H.237, A:H.288, C:H.159 CU.3: 7 residues within 4Å: Chain A: H.235, H.237 Chain C: H.103, H.105 Ligands: CU.2, OXY.6, CU.10 2 PLIP interactions: 1 interactions with chain A, 1 interactions with chain C Metal complexes: A:H.235, C:H.103 CU.4: 5 residues within 4Å: Chain A: H.103, H.105, H.157 Chain B: H.290 Ligands: OXY.7 3 PLIP interactions: 2 interactions with chain A, 1 interactions with chain B Metal complexes: A:H.105, A:H.157, B:H.290 CU.5: 5 residues within 4Å: Chain A: H.103, H.105 Chain B: H.235, H.237 Ligands: OXY.7 3 PLIP interactions: 1 interactions with chain A, 1 interactions with chain B, 1 Ligand-Water interactions Metal complexes: A:H.103, B:H.235, H2O.1 CU.9: 4 residues within 4Å: Chain A: H.159 Chain B: H.237, H.288 Ligands: OXY.7 3 PLIP interactions: 1 interactions with chain A, 2 interactions with chain B Metal complexes: A:H.159, B:H.237, B:H.288 CU.10: 6 residues within 4Å: Chain A: H.290 Chain C: H.103, H.105, H.157 Ligands: CU.3, OXY.6 3 PLIP interactions: 2 interactions with chain C, 1 interactions with chain A Metal complexes: C:H.105, C:H.157, A:H.290 CU.11: 4 residues within 4Å: Chain B: H.232, C.289, H.294, M.299 3 PLIP interactions: 3 interactions with chain B Metal complexes: B:H.232, B:C.289, B:H.294 CU.12: 6 residues within 4Å: Chain B: H.103, H.105, H.157 Chain C: H.290 Ligands: CU.13, OXY.16 3 PLIP interactions: 2 interactions with chain B, 1 interactions with chain C Metal complexes: B:H.105, B:H.157, C:H.290 CU.13: 6 residues within 4Å: Chain B: H.103, H.105 Chain C: H.235, H.237 Ligands: CU.12, OXY.16 2 PLIP interactions: 1 interactions with chain C, 1 interactions with chain B Metal complexes: C:H.235, B:H.103 CU.15: 4 residues within 4Å: Chain B: H.159 Chain C: H.237, H.288 Ligands: OXY.16 3 PLIP interactions: 2 interactions with chain C, 1 interactions with chain B Metal complexes: C:H.237, C:H.288, B:H.159 CU.17: 4 residues within 4Å: Chain C: H.232, C.289, H.294, M.299 3 PLIP interactions: 3 interactions with chain C Metal complexes: C:H.232, C:C.289, C:H.294

3 x OXY: OXYGEN MOLECULE(Non-covalent)

OXY.6: 11 residues within 4Å: Chain A: H.235, H.237, H.288, H.290 Chain C: H.103, H.105, H.157, H.159 Ligands: CU.2, CU.3, CU.10 No protein-ligand interaction detected (PLIP) OXY.7: 11 residues within 4Å: Chain A: H.103, H.105, H.157, H.159 Chain B: H.235, H.237, H.288, H.290 Ligands: CU.4, CU.5, CU.9 No protein-ligand interaction detected (PLIP) OXY.16: 11 residues within 4Å: Chain B: H.103, H.105, H.157, H.159 Chain C: H.235, H.237, H.288, H.290 Ligands: CU.12, CU.13, CU.15 No protein-ligand interaction detected (PLIP)

1 x NA: SODIUM ION(Non-functional Binders)

NA.8: 0 residues within 4Å: (No contacts) 2 PLIP interactions: 1 interactions with chain A, 1 interactions with chain C Water bridges: A:D.243, C:D.243

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.14: 2 residues within 4Å: Chain B: A.190, T.191 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Gabdulkhakov, A. et al., Crystal Structure of Two-Domain Laccase from Streptomyces griseoflavus. To Be Published

Release Date

2017-08-16

Peptides

Two-domain laccase: ABC

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
D

B
E

C
F

Two-domain laccase

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