SMTL ID : 6s0o.2 (1 other biounit)

Crystal Structure of Two-Domain Laccase from Streptomyces griseoflavus produced at 0.25 mM copper sulfate in growth medium

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

hetero-2-1-mer

Ligands

12 x CU: COPPER (II) ION(Non-covalent)

CU.1: 5 residues within 4Å: Chain A: H.232, C.289, V.291, H.294, M.299 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:H.232, A:C.289, A:H.294 CU.2: 3 residues within 4Å: Chain A: H.237, H.288 Chain C: H.120 4 PLIP interactions: 2 interactions with chain A, 1 interactions with chain C, 1 Ligand-Water interactions Metal complexes: A:H.237, A:H.288, C:H.120, H2O.1 CU.3: 4 residues within 4Å: Chain A: H.235, H.237 Chain C: H.64, H.66 3 PLIP interactions: 1 interactions with chain C, 1 interactions with chain A, 1 Ligand-Water interactions Metal complexes: C:H.64, A:H.235, H2O.7 CU.4: 4 residues within 4Å: Chain A: H.103, H.105, H.157 Chain B: H.290 4 PLIP interactions: 2 interactions with chain A, 1 interactions with chain B, 1 Ligand-Water interactions Metal complexes: A:H.105, A:H.157, B:H.290, H2O.5 CU.7: 4 residues within 4Å: Chain B: H.232, C.289, H.294, M.299 3 PLIP interactions: 3 interactions with chain B Metal complexes: B:H.232, B:C.289, B:H.294 CU.8: 3 residues within 4Å: Chain A: H.159 Chain B: H.237, H.288 4 PLIP interactions: 2 interactions with chain B, 1 interactions with chain A, 1 Ligand-Water interactions Metal complexes: B:H.237, B:H.288, A:H.159, H2O.5 CU.9: 4 residues within 4Å: Chain A: H.103, H.105 Chain B: H.235, H.237 3 PLIP interactions: 1 interactions with chain B, 1 interactions with chain A, 1 Ligand-Water interactions Metal complexes: B:H.235, A:H.103, H2O.2 CU.10: 5 residues within 4Å: Chain B: H.103, H.105, H.157 Chain C: H.251 Ligands: CU.11 4 PLIP interactions: 1 interactions with chain C, 2 interactions with chain B, 1 Ligand-Water interactions Metal complexes: C:H.251, B:H.105, B:H.157, H2O.8 CU.11: 5 residues within 4Å: Chain B: H.103, H.105 Chain C: H.196, H.198 Ligands: CU.10 3 PLIP interactions: 1 interactions with chain C, 1 interactions with chain B, 1 Ligand-Water interactions Metal complexes: C:H.196, B:H.103, H2O.4 CU.13: 4 residues within 4Å: Chain A: H.290 Chain C: H.64, H.66, H.118 4 PLIP interactions: 1 interactions with chain A, 2 interactions with chain C, 1 Ligand-Water interactions Metal complexes: A:H.290, C:H.66, C:H.118, H2O.1 CU.14: 4 residues within 4Å: Chain C: H.193, C.250, H.255, M.260 3 PLIP interactions: 3 interactions with chain C Metal complexes: C:H.193, C:C.250, C:H.255 CU.15: 4 residues within 4Å: Chain B: H.159 Chain C: H.196, H.198, H.249 4 PLIP interactions: 2 interactions with chain C, 1 interactions with chain B, 1 Ligand-Water interactions Metal complexes: C:H.198, C:H.249, B:H.159, H2O.8

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.5: 3 residues within 4Å: Chain A: R.204, P.210, N.211 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:R.204, A:R.204, A:N.211

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.6: 3 residues within 4Å: Chain A: G.279 Chain C: R.95, R.108 2 PLIP interactions: 2 interactions with chain C Hydrogen bonds: C:R.95 Salt bridges: C:R.108 SO4.12: 2 residues within 4Å: Chain B: T.132, R.134 1 PLIP interactions: 1 interactions with chain B Salt bridges: B:R.134

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Gabdulkhakov, A. et al., Investigations of Accessibility of T2/T3 Copper Center of Two-Domain Laccase fromStreptomyces griseoflavusAc-993. Int J Mol Sci (2019)

Release Date

2019-07-17

Peptides

Two-domain laccase: AB
Two-domain laccase: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
D

B
E

C
F

Two-domain laccase

Two-domain laccase

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