SMTL ID : 5lp1.1

CRYSTAL STRUCTURE OF HUMAN LIPOPROTEIN-ASSOCIATED PHOSPHOLIPASE A2 IN COMPLEX WITH A [1.1.1]BICYCLOPENTANE-CONTAINING INHIBITOR AT 1.91A RESOLUTION.

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.91 Å

Oligo State

monomer

Ligands

2 x CL: CHLORIDE ION(Non-functional Binders)

CL.1: 4 residues within 4Å: Chain A: Y.276, F.277, V.305, H.306 Ligand excluded by PLIP CL.2: 3 residues within 4Å: Chain A: Y.279, P.280, A.281 Ligand excluded by PLIP

1 x 71H: ~{N}-[2-(diethylamino)ethyl]-2-[2-[(4-fluorophenyl)methylsulfanyl]-4-oxidanylidene-5~{H}-cyclopenta[d]pyrimidin-1-yl]-~{N}-[[3-[4-(trifluoromethyl)phenyl]-1-bicyclo[1.1.1]pentanyl]methyl]ethanamide(Non-covalent)

71H.3: 18 residues within 4Å: Chain A: L.62, F.65, L.66, L.76, G.107, L.108, G.109, A.110, L.114, Y.115, S.228, F.229, W.253, H.306, Q.307, A.310, F.312, L.326 10 PLIP interactions: 10 interactions with chain A Hydrophobic interactions: A:F.65, A:F.65, A:L.66, A:A.110, A:W.253, A:A.310 Hydrogen bonds: A:L.108, A:S.228, A:F.229 pi-Stacking: A:H.306

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Measom, N.D. et al., Investigation of a Bicyclo[1.1.1]pentane as a Phenyl Replacement within an LpPLA2 Inhibitor. ACS Med Chem Lett (2017)

Release Date

2017-02-01

Peptides

Platelet-activating factor acetylhydrolase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Platelet-activating factor acetylhydrolase

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