SMTL ID : 5lrg.3 (2 other biounits)

Crystal structure of the porcine carboxypeptidase B - Anabaenopeptin B complex

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.02 Å

Oligo State

monomer

Ligands

1 x 73N- DLY- VAL- 73O- MAA- PHE: Anabaenopeptin B(Non-covalent)

73N-DLY-VAL-73O-MAA-PHE.1: 24 residues within 4Å: Chain A: H.66, R.68, E.69, M.122, R.124, N.141, R.142, E.160, T.161, S.195, Y.196, S.197, L.201, S.205, I.245, Y.246, A.248, G.251, D.253, D.254, T.266, E.268, F.277 Ligands: ZN.2 39 PLIP interactions: 39 interactions with chain A Hydrophobic interactions: A:M.122, A:T.161, A:Y.196, A:L.201, A:I.245, A:T.266, A:F.277 Hydrogen bonds: A:R.68, A:R.124, A:R.124, A:N.141, A:E.160, A:S.205, A:Y.246, A:Y.246, A:A.248, A:T.266, A:E.268 Water bridges: A:R.142, A:H.194, A:H.194, A:Y.196, A:Y.196, A:Y.196, A:Y.196, A:S.205, A:A.248, A:A.248, A:S.252, A:D.253, A:D.253, A:D.254, A:E.268 Salt bridges: A:H.66, A:R.124, A:R.142, A:D.253, A:D.254 pi-Cation interactions: A:R.68

1 x ZN: ZINC ION(Non-covalent)

ZN.2: 5 residues within 4Å: Chain A: H.66, E.69, H.194, S.195 Ligands: 73N-DLY-VAL-73O-MAA-PHE.1 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:H.66, A:E.69, A:E.69, A:H.194, H2O.1

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Schreuder, H. et al., Isolation, Co-Crystallization and Structure-Based Characterization of Anabaenopeptins as Highly Potent Inhibitors of Activated Thrombin Activatable Fibrinolysis Inhibitor (TAFIa). Sci Rep (2016)

Release Date

2016-09-21

Peptides

Carboxypeptidase B: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

Carboxypeptidase B

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